RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1215774" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA1215774 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11809669 11809669 PRJNA1215774_P_NODE_38790_length_338_cov_3.350943_g38470_i0 PRJNA1215774 38790 338 3.350943 11.32618734 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.032   NTclustered gi|1031970221|gb|CP015655.1| 85057 g38470 i0 100 0.0828402366863905 28 0 8 0 89 116 50537 50510 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
14360608 14360608 PRJNA1215774_P_NODE_81472_length_243_cov_0.905882_g81152_i0 PRJNA1215774 81472 243 0.905882 2.20129326 Rhynchobodo sp. Hamilton Lake 266815 Euglenozoa other_Eukaryota 444 3.09e-120   NTclustered gi|45739055|gb|AY490213.1| 266815 g81152 i0 99.588 100.411522633745 243 1 100 0 1 243 1851 2093 Rhynchobodo sp. Hamilton Lake 18S ribosomal RNA gene, partial sequence blastn 24400 444 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Rhynchobodo Rhynchobodo sp. Hamilton Lake

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;