RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1214993" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1214993 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10534255 10534255 PRJNA1214993_P_NODE_609_length_1214_cov_6.673094_g515_i0 PRJNA1214993 609 1214 6.673094 81.01136116 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 656 0   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g515 i0 86.258 54.7537067545305 604 83 50 0 453 1056 605 2 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 66471 656 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
13084102 13084102 PRJNA1214993_P_NODE_771_length_1106_cov_13.086157_g665_i0 PRJNA1214993 771 1106 13.086157 144.73289642 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 651 0   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g665 i0 86.213 8.66817359855335 602 81 79 2 330 930 601 1 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 9587 651 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
13798777 13798777 PRJNA1214993_P_NODE_16391_length_276_cov_1.389163_g16205_i0 PRJNA1214993 16391 276 1.389163 3.83408988 Plagiostomum 84130 Platyhelminthes Platyhelminthes 139 1.8899999999999999e-28   NTclustered gi|1587089599|gb|MG882058.1| 2544880 g16205 i0 86.364 44.8297101449275 132 12 47 5 145 273 929 1057 Plagiostomum sp. n. MW-2019 isolate XK2 28S ribosomal RNA gene, partial sequence blastn 12373 139 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Prolecithophora Plagiostomidae Plagiostomum Plagiostomum sp. n. MW-2019
19456462 19456462 PRJNA1214993_P_NODE_5956_length_439_cov_4.346995_g5771_i0 PRJNA1214993 5956 439 4.346995 19.08330805 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 721 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g5771 i0 96.355 1 439 15 100 1 1 439 12 449 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 439 721 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;