RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1214993" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1214993 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
330382 330382 PRJNA1214993_P_NODE_8361_length_375_cov_2.029801_g8175_i0 PRJNA1214993 8361 375 2.029801 7.61175375 Polychytrium aggregatum 110093 Fungi Fungi 220 9.25e-53   NTclustered gi|2432142218|ref|XM_053114797.1| 110093 g8175 i0 80.556 71.32 288 54 77 2 89 375 468 182 Polychytrium aggregatum ribosomal protein S13/S18-domain-containing protein (BJ171DRAFT_597985), partial mRNA blastn 26745 220 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
11808995 11808995 PRJNA1214993_P_NODE_2510_length_662_cov_3.254669_g2334_i0 PRJNA1214993 2510 662 3.254669 21.54590878 Polychytrium aggregatum 110093 Fungi Fungi 322 4.55e-83   NTclustered gi|2432134333|ref|XM_053109764.1| 110093 g2334 i0 76.783 73.4138972809668 603 122 89 13 6 596 671 75 Polychytrium aggregatum 60S ribosomal protein I1-a (BJ171DRAFT_491703), mRNA blastn 48600 322 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
11809048 11809048 PRJNA1214993_P_NODE_6070_length_435_cov_2.204420_g5885_i0 PRJNA1214993 6070 435 2.20442 9.589227 Fimicolochytrium jonesii 1396493 Fungi Fungi 207 8.47e-49   NTclustered gi|2432072949|ref|XM_053073468.1| 1396493 g5885 i0 86.631 55.0505747126437 187 25 43 0 249 435 539 353 Fimicolochytrium jonesii ubiquitin-related domain-containing protein (EV422DRAFT_586682), mRNA blastn 23947 207 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
22722315 22722315 PRJNA1214993_P_NODE_20978_length_250_cov_1.322034_g20792_i0 PRJNA1214993 20978 250 1.322034 3.305085 Fungi 4751 Fungi Fungi 248 2.69e-61   NTclustered gi|2432156156|ref|XM_053111563.1| 110093 g20792 i0 84.861 92.82 251 33 100 3 1 250 520 766 Polychytrium aggregatum uncharacterized protein (BJ171DRAFT_511326), mRNA blastn 23205 248 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
24556455 24556455 PRJNA1214993_P_NODE_21800_length_249_cov_0.886364_g21614_i0 PRJNA1214993 21800 249 0.886364 2.20704636 Synchytrium sp. 1971732 Fungi Fungi 104 6.13e-18   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g21614 i0 78.528 0.654618473895582 163 31 65 4 31 191 1066 906 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 163 104 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;