RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1214993" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1214993 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8698399 8698399 PRJNA1214993_P_NODE_25467_length_243_cov_0.917647_g25281_i0 PRJNA1214993 25467 243 0.917647 2.22988221 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|916514709|ref|XM_013501976.1| 44415 g25281 i0 100 0.781893004115226 30 0 12 0 140 169 857 886 Eimeria mitis uncharacterized protein (EMH_0022530), partial mRNA blastn 190 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
16907552 16907552 PRJNA1214993_P_NODE_7974_length_383_cov_2.825806_g7788_i0 PRJNA1214993 7974 383 2.825806 10.82283698 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 235 3.38e-57   NTclustered gi|401402052|ref|XM_003881109.1| 572307 g7788 i0 78.042 70.7624020887728 378 79 98 4 8 383 378 3 Neospora caninum Liverpool putative ubiquitin / ribosomal protein CEP52 fusion protein (NCLIV_042000), partial mRNA blastn 27102 235 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
22007146 22007146 PRJNA1214993_P_NODE_26038_length_242_cov_0.923077_g25852_i0 PRJNA1214993 26038 242 0.923077 2.23384634 Babesia sp. ex Cervus nippon 1354810 SAR_Eukaryotes SAR_Eukaryotes 176 1.24e-39   NTclustered gi|524845520|gb|KC465971.1| 1354810 g25852 i0 79.835 90.5702479338843 243 47 100 2 1 242 828 587 Babesia sp. ex Cervus nippon isolate 08-22 beta-tubulin gene, partial cds blastn 21918 176 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia sp. ex Cervus nippon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;