RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1214993" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1214993 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10534107 10534107 PRJNA1214993_P_NODE_12449_length_312_cov_2.861925_g12263_i0 PRJNA1214993 12449 312 2.861925 8.929206 Occallatibacter riparius 1002689 Bacteria Bacteria 56.5 0.002   NTclustered gi|2304899767|gb|CP093313.1| 1002689 g12263 i0 97.059 0.108974358974359 34 0 11 1 266 299 6537294 6537262 Occallatibacter riparius strain DSM 25168 chromosome, complete genome blastn 34 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Occallatibacter Occallatibacter riparius
23282481 23282481 PRJNA1214993_P_NODE_22279_length_248_cov_0.891429_g22093_i0 PRJNA1214993 22279 248 0.891429 2.21074392 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 52.8 0.022   NTclustered gi|2874253802|emb|OY969786.1| 194844 g22093 i0 100 0.112903225806452 28 0 11 0 159 186 3433033 3433006 MAG: uncultured Acidobacteriaceae bacterium isolate MFD09671.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;