RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1214993" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1214993 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2320755 2320755 PRJNA1214993_P_NODE_7022_length_407_cov_1.790419_g6837_i0 PRJNA1214993 7022 407 1.790419 7.28700533 root 1 Root_unresolved Root_unresolved 741 0   NTclustered gi|2113031129|gb|OK500351.1| 47478 g6837 i0 99.509 106.004914004914 407 2 100 0 1 407 837 431 Deinococcus sp. strain R11 16S ribosomal RNA gene, partial sequence blastn 43144 741 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
12524052 12524052 PRJNA1214993_P_NODE_12990_length_306_cov_2.309013_g12804_i0 PRJNA1214993 12990 306 2.309013 7.06557978 Deinococcus 1298 Bacteria Bacteria 427 4.0599999999999997e-115   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g12804 i0 91.83 205.372549019608 306 25 100 0 1 306 423348 423043 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 62844 427 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
13798810 13798810 PRJNA1214993_P_NODE_8451_length_374_cov_1.269103_g8265_i0 PRJNA1214993 8451 374 1.269103 4.74644522 Deinococcus 1298 Bacteria Bacteria 562 1.33e-155   NTclustered gi|470478007|ref|NR_076423.1| 68909 g8265 i0 93.867 216.291443850267 375 20 100 3 1 374 639 1011 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 80893 564 0.99645390070922 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
18896940 18896940 PRJNA1214993_P_NODE_18655_length_259_cov_1.688172_g18469_i0 PRJNA1214993 18655 259 1.688172 4.37236548 Deinococcus 1298 Bacteria Bacteria 375 1.2299999999999998e-99   NTclustered gi|730601855|gb|CP010028.1| 57497 g18469 i0 92.776 284.799227799228 263 13 100 5 1 259 70131 69871 Deinococcus swuensis strain DY59, complete genome blastn 73763 375 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;