RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1214993" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA1214993 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10534092 10534092 PRJNA1214993_P_NODE_10389_length_340_cov_1.677903_g10203_i0 PRJNA1214993 10389 340 1.677903 5.7048702 Singulisphaera sp. Ch08 3120278 Bacteria Bacteria 534 2.62e-147   NTclustered gi|2732846650|gb|CP155447.1| 3120278 g10203 i0 95.015 175.879411764706 341 15 100 2 1 340 3413086 3412747 Singulisphaera sp. Ch08 chromosome, complete genome blastn 59799 534 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera sp. Ch08
16907475 16907475 PRJNA1214993_P_NODE_21094_length_250_cov_0.881356_g20908_i0 PRJNA1214993 21094 250 0.881356 2.20339 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 331 2.6e-86   NTclustered gi|2874253757|emb|OY969698.1| 100233 g20908 i0 90.837 125.372 251 18 99 5 3 250 4421030 4421278 MAG: uncultured Planctomycetaceae bacterium isolate MFD00082.bin.2.56 genome assembly, chromosome: 1 blastn 31343 331 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
19456383 19456383 PRJNA1214993_P_NODE_20796_length_251_cov_0.865169_g20610_i0 PRJNA1214993 20796 251 0.865169 2.17157419 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 448 2.48e-121   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g20610 i0 98.805 288.05577689243 251 3 100 0 1 251 1032 782 Luteolibacter sp. SL250 chromosome blastn 72302 448 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
20731715 20731715 PRJNA1214993_P_NODE_13837_length_297_cov_0.995536_g13651_i0 PRJNA1214993 13837 297 0.995536 2.95674192 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 472 1.7899999999999998e-128   NTclustered gi|2874253948|emb|OY970273.1| 100233 g13651 i0 95.578 128.771043771044 294 13 99 0 4 297 2621115 2620822 MAG: uncultured Planctomycetaceae bacterium isolate MFD09495.bin.c.1 genome assembly, chromosome: 1 blastn 38245 472 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
23997527 23997527 PRJNA1214993_P_NODE_9259_length_359_cov_1.090909_g9073_i0 PRJNA1214993 9259 359 1.090909 3.91636331 Botrimarina 2795782 Bacteria Bacteria 549 9.889999999999996e-152   NTclustered gi|1712768844|gb|CP036350.1| 2527962 g9073 i0 94.398 115.924791086351 357 20 99 0 3 359 4245554 4245198 Planctomycetes bacterium K2D chromosome, complete genome blastn 41617 549 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetes bacterium K2D

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;