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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1204310" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1204310 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2320354 2320354 PRJNA1204310_P_NODE_36682_length_308_cov_0.995745_g36385_i0 PRJNA1204310 36682 308 0.995745 3.0668946 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 564 2.99e-156   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g36385 i0 99.675 49.2402597402597 308 1 100 0 1 308 575 268 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 15166 569 0.991212653778559 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
4156355 4156355 PRJNA1204310_P_NODE_43324_length_281_cov_4.538462_g43027_i0 PRJNA1204310 43324 281 4.538462 12.75307822 Glaeseria mira 242547 Tubulinea other_Eukaryota 335 2.3e-87   NTclustered gi|33946352|gb|AY294155.1| 242547 g43027 i0 88.489 91.1138790035587 278 31 99 1 1 277 296 19 Glaeseria mira actin mRNA, partial cds blastn 25603 335 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira
5431756 5431756 PRJNA1204310_P_NODE_1005_length_1408_cov_3.402996_g886_i0 PRJNA1204310 1005 1408 3.402996 47.91418368 Copromyxa protea 931554 Tubulinea other_Eukaryota 1557 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g886 i0 87.15 27.1732954545455 1393 153 97 16 14 1384 1 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 38260 1557 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
5432241 5432241 PRJNA1204310_P_NODE_29085_length_344_cov_2.140221_g28788_i0 PRJNA1204310 29085 344 2.140221 7.36236024 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 636 7.059999999999998e-178   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g28788 i0 100 83.1482558139535 344 0 100 0 1 344 1083 740 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 28603 636 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
6707350 6707350 PRJNA1204310_P_NODE_51246_length_253_cov_0.866667_g50949_i0 PRJNA1204310 51246 253 0.866667 2.19266751 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 468 1.92e-127   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g50949 i0 100 26.6837944664032 253 0 100 0 1 253 1655 1403 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 6751 468 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
9256823 9256823 PRJNA1204310_P_NODE_21628_length_391_cov_1.116352_g21331_i0 PRJNA1204310 21628 391 1.116352 4.36493632 Copromyxa laresi 1789826 Tubulinea other_Eukaryota 640 6.27e-179   NTclustered gi|1042160931|dbj|LC102272.1| 1789826 g21331 i0 96.164 99.3222506393862 391 15 100 0 1 391 57 447 Copromyxa sp. MK-2016 gene for actin, partial cds, strain: ZEB1_cl1 blastn 38835 640 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
12523606 12523606 PRJNA1204310_P_NODE_14070_length_472_cov_6.263158_g13773_i0 PRJNA1204310 14070 472 6.263158 29.56210576 Saccamoeba 136463 Tubulinea other_Eukaryota 872 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g13773 i0 100 95.2733050847458 472 0 100 0 1 472 1652 1181 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 44969 872 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
18180207 18180207 PRJNA1204310_P_NODE_11855_length_511_cov_1.958904_g11558_i0 PRJNA1204310 11855 511 1.958904 10.00999944 Copromyxa protea 931554 Tubulinea other_Eukaryota 364 5.6599999999999985e-96   NTclustered gi|508737347|dbj|AB766053.1| 931554 g11558 i0 80.04 1.09784735812133 496 95 97 4 1 494 494 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 561 364 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;