RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1204310" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1204310 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6707605 6707605 PRJNA1204310_P_NODE_6706_length_664_cov_7.627750_g6426_i0 PRJNA1204310 6706 664 7.62775 50.64826 Brachionus rubens 392764 Rotifera other_Eukaryota 407 1.23e-108   NTclustered gi|1802791198|gb|MN256531.1| 392764 g6426 i0 79.213 30.1355421686747 635 94 94 31 11 633 11182 11790 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 20010 407 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
9257474 9257474 PRJNA1204310_P_NODE_49948_length_256_cov_0.836066_g49651_i0 PRJNA1204310 49948 256 0.836066 2.14032896 Lepadellidae sp. SHQC150123a 1804024 Rotifera other_Eukaryota 292 1.26e-74   NTclustered gi|1009658444|gb|KU720095.1| 1804024 g49651 i0 88.75 96.98046875 240 26 93 1 16 254 1 240 Lepadellidae sp. SHQC150123a cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 24827 292 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae   Lepadellidae sp. SHQC150123a
11808194 11808194 PRJNA1204310_P_NODE_53490_length_251_cov_0.876404_g53193_i0 PRJNA1204310 53490 251 0.876404 2.19977404 Habrotrocha lata 468654 Rotifera other_Eukaryota 355 1.55e-93   NTclustered gi|157365250|gb|EF650485.1| 468654 g53193 i0 92.369 97.8844621513944 249 19 99 0 1 249 598 350 Habrotrocha lata isolate H.lata.UK cytochrome oxidase subunit I gene, partial cds; mitochondrial blastn 24569 355 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha lata
13083269 13083269 PRJNA1204310_P_NODE_5451_length_730_cov_1.508371_g5189_i0 PRJNA1204310 5451 730 1.508371 11.0111083 Asplanchna sp. 3231738 Rotifera other_Eukaryota 551 5.909999999999998e-152   NTclustered gi|2778092484|gb|PP988072.1| 3231738 g5189 i0 80.905 73.613698630137 707 128 96 5 1 702 643 1347 Asplanchna sp. chromosome II mitochondrion, complete sequence blastn 53738 551 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.
16906921 16906921 PRJNA1204310_P_NODE_61694_length_243_cov_0.917647_g61397_i0 PRJNA1204310 61694 243 0.917647 2.22988221 Keratella quadrata 204742 Rotifera other_Eukaryota 215 2.64e-51   NTclustered gi|83321177|gb|DQ297802.1| 204742 g61397 i0 83.843 53.3662551440329 229 33 93 4 17 243 293 67 Keratella quadrata histone H3 gene, partial cds blastn 12968 215 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Keratella Keratella quadrata
24555363 24555363 PRJNA1204310_P_NODE_38460_length_300_cov_1.008811_g38163_i0 PRJNA1204310 38460 300 1.008811 3.026433 Philodina citrina 468664 Rotifera other_Eukaryota 302 2.51e-77   NTclustered gi|407227484|emb|FR856884.1| 468664 g38163 i0 90.393 32.35 229 22 76 0 55 283 1870 2098 Philodina citrina complete mitochondrial genome blastn 9705 302 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;