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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1204310" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1204310 · 12 ✖

analysis 1

  • blastn · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1604079 1604079 PRJNA1204310_P_NODE_40042_length_293_cov_0.990909_g39745_i0 PRJNA1204310 40042 293 0.990909 2.90336337 Strongyloides ratti 34506 Nematoda Nematoda 207 5.48e-49   NTclustered gi|1376147725|ref|XM_024654528.1| 34506 g39745 i0 81.061 38.211604095563096 264 47 90 3 12 274 929 668 Strongyloides ratti ATP synthase subunit alpha, mitochondrial (SRAE_2000334600), partial mRNA blastn 11196 207 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
1604587 1604587 PRJNA1204310_P_NODE_7902_length_617_cov_1.621324_g7616_i0 PRJNA1204310 7902 617 1.621324 10.00356908 Strongyloides ratti 34506 Nematoda Nematoda 558 2.96e-154   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g7616 i0 82.982 256.525121555916 617 105 100 0 1 617 1482 866 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 158276 558 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
4155755 4155755 PRJNA1204310_P_NODE_17884_length_424_cov_1.384615_g17587_i0 PRJNA1204310 17884 424 1.384615 5.8707676 Strongyloides ratti 34506 Nematoda Nematoda 346 1.67e-90   NTclustered gi|1376148845|ref|XM_024642710.1| 34506 g17587 i0 83.377 86.1981132075472 385 52 89 11 45 423 688 310 Strongyloides ratti Tubulin beta-2A chain (SRAE_2000390300), partial mRNA blastn 36548 346 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
5432249 5432249 PRJNA1204310_P_NODE_29485_length_342_cov_1.736059_g29188_i0 PRJNA1204310 29485 342 1.736059 5.93732178 Caenorhabditis briggsae 6238 Nematoda Nematoda 67.6 1.15e-6   NTclustered gi|268554026|ref|XM_002634955.1| 6238 g29188 i0 80.435 0.538011695906433 92 15 26 1 113 201 556 647 Caenorhabditis briggsae Protein CBG13541 (CBG13541), partial mRNA blastn 184 67.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
7982859 7982859 PRJNA1204310_P_NODE_4427_length_800_cov_4.310867_g4172_i0 PRJNA1204310 4427 800 4.310867 34.486936 Strongyloides papillosus 174720 Nematoda Nematoda 418 6.869999999999999e-112   NTclustered gi|687022644|emb|LM525558.1| 174720 g4172 i0 81.641 35.905 512 86 64 8 293 800 232206 232713 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 28724 418 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
10533192 10533192 PRJNA1204310_P_NODE_42609_length_284_cov_1.459716_g42312_i0 PRJNA1204310 42609 284 1.459716 4.14559344 Strongyloides ratti 34506 Nematoda Nematoda 159 1.5e-34   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g42312 i0 91.379 35.2464788732394 116 10 41 0 2 117 1009 1124 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 10010 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
11807212 11807212 PRJNA1204310_P_NODE_11950_length_509_cov_2.394495_g11653_i0 PRJNA1204310 11950 509 2.394495 12.18797955 Pristionchus arcanus 1195655 Nematoda Nematoda 281 5.83e-71   NTclustered gi|390135506|gb|JQ399950.1| 1195655 g11653 i0 80.319 22.7170923379175 376 70 74 4 47 422 16 387 Pristionchus arcanus small subunit ribosomal protein 14 (rps-14) gene, partial cds blastn 11563 281 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus arcanus
13082273 13082273 PRJNA1204310_P_NODE_14511_length_466_cov_1.071247_g14214_i0 PRJNA1204310 14511 466 1.071247 4.99201102 Diplogastrellus gracilis 669117 Nematoda Nematoda 213 1.96e-50   NTclustered gi|256709130|gb|GQ422217.1| 669117 g14214 i0 77.746 14.8583690987124 355 73 76 6 1 352 376 727 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 6924 213 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
13082863 13082863 PRJNA1204310_P_NODE_36871_length_307_cov_1.269231_g36574_i0 PRJNA1204310 36871 307 1.269231 3.89653917 Caenorhabditis elegans 6239 Nematoda Nematoda 62.1 4.76e-5   NTclustered gi|1734330684|ref|NM_069308.6| 6239 g36574 i0 94.872 1.14332247557003 39 2 13 0 47 85 2290 2252 Caenorhabditis elegans Plasma membrane calcium-transporting ATPase mca-1 (mca-1), mRNA blastn 351 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13083443 13083443 PRJNA1204310_P_NODE_63171_length_215_cov_6.021127_g62874_i0 PRJNA1204310 63171 215 6.021127 12.94542305 Caenorhabditis remanei 31234 Nematoda Nematoda 52.8 0.019   NTclustered gi|2445383759|ref|XM_053732915.1| 31234 g62874 i0 100 0.26046511627907 28 0 13 0 88 115 657 630 Caenorhabditis remanei uncharacterized protein (GCK72_019189), partial mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
18180350 18180350 PRJNA1204310_P_NODE_16875_length_435_cov_2.406077_g16578_i0 PRJNA1204310 16875 435 2.406077 10.46643495 Strongyloides papillosus 174720 Nematoda Nematoda 411 6.019999999999999e-110   NTclustered gi|690020982|emb|LM528613.1| 174720 g16578 i0 83.678 247.112643678161 435 71 100 0 1 435 473 39 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0002940 blastn 107494 411 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
24555757 24555757 PRJNA1204310_P_NODE_55860_length_248_cov_1.468571_g55563_i0 PRJNA1204310 55860 248 1.468571 3.64205608 Pristionchus pauli 376545 Nematoda Nematoda 139 1.67e-28   NTclustered gi|150982019|gb|EF634598.1| 376545 g55563 i0 81.111 1.66935483870968 180 28 71 6 63 239 37 213 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 414 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;