RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1204310" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1204310 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4156297 4156297 PRJNA1204310_P_NODE_40564_length_291_cov_1.160550_g40267_i0 PRJNA1204310 40564 291 1.16055 3.3772005 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 159 1.5399999999999999e-34   NTclustered gi|2531948656|emb|OY282446.1| 3022862 g40267 i0 86 12.4845360824742 150 19 51 2 125 273 1125745 1125597 MAG: Tepidiformaceae bacterium genome assembly, chromosome: 1 blastn 3633 159 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium
19455118 19455118 PRJNA1204310_P_NODE_28736_length_346_cov_1.271062_g28439_i0 PRJNA1204310 28736 346 1.271062 4.39787452 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 65.8 4.21e-6   NTclustered gi|2893358381|emb|OZ220675.1| 2026734 g28439 i0 97.368 0.109826589595376 38 1 11 0 184 221 1240179 1240142 MAG: Dehalococcoidia bacterium isolate ea37d81f-01db-49a7-af8b-960c32e5f49c genome assembly, chromosome: 1 blastn 38 65.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;