RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1204310" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1204310 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14358806 14358806 PRJNA1204310_P_NODE_7072_length_649_cov_1.746528_g6788_i0 PRJNA1204310 7072 649 1.746528 11.33496672 Mesoterricola silvestris 2927979 Bacteria Bacteria 503 1.48e-137   NTclustered gi|2490891634|dbj|AP027080.1| 2927979 g6788 i0 80.952 95.5624036979969 651 111 99 10 7 649 650089 649444 Mesoterricola silvestris W79 DNA, complete genome blastn 62020 503 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Mesoterricola Mesoterricola silvestris
18180238 18180238 PRJNA1204310_P_NODE_12895_length_491_cov_1.389952_g12598_i0 PRJNA1204310 12895 491 1.389952 6.82466432 Mesoterricola silvestris 2927979 Bacteria Bacteria 392 2.4899999999999994e-104   NTclustered gi|2490891634|dbj|AP027080.1| 2927979 g12598 i0 81.743 82.9144602851324 482 76 97 9 16 491 650718 650243 Mesoterricola silvestris W79 DNA, complete genome blastn 40711 392 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Mesoterricola Mesoterricola silvestris
19455766 19455766 PRJNA1204310_P_NODE_58096_length_246_cov_1.352601_g57799_i0 PRJNA1204310 58096 246 1.352601 3.32739846 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 171 5.879999999999999e-38   NTclustered gi|2874253709|emb|OY969474.1| 171953 g57799 i0 79.757 68.0894308943089 247 40 99 8 2 246 4606878 4607116 MAG: uncultured Acidobacteriota bacterium isolate MFD05747.bin.1.131 genome assembly, chromosome: 1 blastn 16750 171 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
22005856 22005856 PRJNA1204310_P_NODE_30198_length_339_cov_1.033835_g29901_i0 PRJNA1204310 30198 339 1.033835 3.50470065 Mesoterricola sediminis 2927980 Bacteria Bacteria 54.7 0.009   NTclustered gi|2490895851|dbj|AP027081.1| 2927980 g29901 i0 100 0.171091445427729 29 0 9 0 139 167 160188 160160 Mesoterricola sediminis W786 DNA, complete genome blastn 58 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Mesoterricola Mesoterricola sediminis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;