RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1204310" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA1204310 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1603355 1603355 PRJNA1204310_P_NODE_11742_length_514_cov_1.061224_g11445_i0 PRJNA1204310 11742 514 1.061224 5.45469136 Thecamonas trahens 529818 Root_unresolved Root_unresolved 316 1.6199999999999996e-81   NTclustered gi|923128656|ref|XM_013902341.1| 461836 g11445 i0 78.737 18.6459143968872 475 99 92 2 1 474 665 1138 Thecamonas trahens ATCC 50062 actin-like protein 2 (AMSG_05368), mRNA blastn 9584 316 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23280918 23280918 PRJNA1204310_P_NODE_18899_length_414_cov_1.395894_g18602_i0 PRJNA1204310 18899 414 1.395894 5.77900116 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 156 2.95e-33   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g18602 i0 90.598 29.6328502415459 117 11 28 0 147 263 5178 5294 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12268 156 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
23281446 23281446 PRJNA1204310_P_NODE_40379_length_291_cov_3.325688_g40082_i0 PRJNA1204310 40379 291 3.325688 9.67775208 Thecamonas trahens 529818 Root_unresolved Root_unresolved 300 8.72e-77   NTclustered gi|923133736|ref|XM_013904880.1| 461836 g40082 i0 89.167 79.1168384879725 240 26 82 0 51 290 108 347 Thecamonas trahens ATCC 50062 ADP-ribosylation factor 1 (AMSG_02990), mRNA blastn 23023 300 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;