RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1200128" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1200128 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19453095 19453095 PRJNA1200128_S_NODE_19636_length_205_cov_0.870370_g19527_i0 PRJNA1200128 19636 205 0.87037 1.7842585 Campylobacterota bacterium DY0563 3396279 Bacteria Bacteria 171 4.74e-38   NTclustered gi|2901665857|gb|CP179914.1| 3396279 g19527 i0 85.366 26.8975609756098 164 24 80 0 11 174 2555355 2555192 Campylobacterota bacterium DY0563 chromosome, complete genome blastn 5514 171 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium DY0563
21446584 21446584 PRJNA1200128_S_NODE_12637_length_234_cov_5.010471_g12528_i0 PRJNA1200128 12637 234 5.010471 11.72450214 root 1 Root_unresolved Root_unresolved 65.8 2.69e-6   NTclustered gi|2222034613|gb|CP094108.1| 210 g12528 i0 100 16.0598290598291 35 0 15 0 6 40 685150 685184 Helicobacter pylori strain Hpfe073 chromosome, complete genome blastn 3758 65.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;