RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1200128" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1200128 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2877935 2877935 PRJNA1200128_S_NODE_24923_length_190_cov_1.551020_g24814_i0 PRJNA1200128 24923 190 1.55102 2.946938 Deinococcus puniceus 1182568 Bacteria Bacteria 302 1.47e-77   NTclustered gi|1028459476|gb|CP011387.1| 1182568 g24814 i0 95.263 180.605263157895 190 9 100 0 1 190 70817 71006 Deinococcus puniceus strain DY1, complete genome blastn 34315 302 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus puniceus
13798058 13798058 PRJNA1200128_S_NODE_13251_length_231_cov_1.840426_g13142_i0 PRJNA1200128 13251 231 1.840426 4.25138406 Deinococcus 1298 Bacteria Bacteria 398 2.3e-106   NTclustered gi|2706840606|gb|CP149783.1| 3112952 g13142 i0 99.541 24.0606060606061 218 1 94 0 1 218 39537 39320 Deinococcus sp. VB142 chromosome 2, complete sequence blastn 5558 398 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
14356140 14356140 PRJNA1200128_S_NODE_7172_length_281_cov_1.184874_g7063_i0 PRJNA1200128 7172 281 1.184874 3.32949594 Deinococcus ficus 317577 Bacteria Bacteria 303 6.48e-78   NTclustered gi|1220362168|gb|CP021081.1| 317577 g7063 i0 86.477 140.73665480427 281 33 99 4 4 281 2342950 2342672 Deinococcus ficus strain CC-FR2-10, complete genome blastn 39547 303 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
22721612 22721612 PRJNA1200128_S_NODE_3518_length_361_cov_1.591195_g3409_i0 PRJNA1200128 3518 361 1.591195 5.74421395 Deinococcus 1298 Bacteria Bacteria 555 2.1399999999999993e-153   NTclustered gi|470486828|ref|NR_076782.1| 502394 g3409 i0 94.475 205.083102493075 362 16 100 4 1 361 1394 1752 Deinococcus gobiensis strain I-0 23S ribosomal RNA gene, complete sequence blastn 74035 555 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;