RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1200128" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1200128 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7980454 7980454 PRJNA1200128_S_NODE_1267_length_605_cov_44.620996_g1173_i0 PRJNA1200128 1267 605 44.620996 269.9570258 Trebouxia sp. SL0000003 3350044 Plants Plants 58.4 0.001   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g1173 i0 100 0.0991735537190083 31 0 5 0 446 476 2994164 2994134 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 60 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
14356087 14356087 PRJNA1200128_S_NODE_37632_length_165_cov_1.959016_g37523_i0 PRJNA1200128 37632 165 1.959016 3.2323764 Trebouxia sp. SL0000003 3350044 Plants Plants 145 2.21e-30   NTclustered gi|2917929626|emb|OZ234914.1| 3350044 g37523 i0 94.624 4.07272727272727 93 5 88 0 53 145 1353425 1353333 Trebouxia sp. SL0000003 genome assembly, chromosome: 9 blastn 672 145 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
20728489 20728489 PRJNA1200128_S_NODE_29857_length_179_cov_1.382353_g29748_i0 PRJNA1200128 29857 179 1.382353 2.47441187 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.015   NTclustered gi|2082253980|ref|XM_043065726.1| 3055 g29748 i0 100 0.156424581005587 28 0 16 0 79 106 3288 3261 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_09g394700v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;