contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA1200128" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 327024 | 327024 | PRJNA1200128_S_NODE_26881_length_185_cov_2.295775_g26772_i0 | PRJNA1200128 | 26881 | 185 | 2.295775 | 4.24718375 | Isosphaeraceae bacterium EP7 | 3139350 | Bacteria | Bacteria | 259 | 8.67e-65 | NTclustered | gi|2719878338|gb|CP151667.1| | 3139350 | g26772 | i0 | 91.892 | 28.2 | 185 | 15 | 100 | 0 | 1 | 185 | 1600681 | 1600497 | Isosphaeraceae bacterium EP7 chromosome, complete genome | blastn | 5217 | 259 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Isosphaeraceae bacterium EP7 | ||
| 1601862 | 1601862 | PRJNA1200128_S_NODE_5742_length_301_cov_2.775194_g5633_i0 | PRJNA1200128 | 5742 | 301 | 2.775194 | 8.35333394 | Isosphaeraceae bacterium EP7 | 3139350 | Bacteria | Bacteria | 490 | 5.01e-134 | NTclustered | gi|2719878338|gb|CP151667.1| | 3139350 | g5633 | i0 | 96.013 | 160.568106312292 | 301 | 12 | 100 | 0 | 1 | 301 | 1600052 | 1599752 | Isosphaeraceae bacterium EP7 chromosome, complete genome | blastn | 48331 | 490 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Isosphaeraceae bacterium EP7 | ||
| 7980466 | 7980466 | PRJNA1200128_S_NODE_14747_length_223_cov_2.788889_g14638_i0 | PRJNA1200128 | 14747 | 223 | 2.788889 | 6.21922247 | Isosphaeraceae bacterium EP7 | 3139350 | Bacteria | Bacteria | 375 | 1.03e-99 | NTclustered | gi|2719878338|gb|CP151667.1| | 3139350 | g14638 | i0 | 97.285 | 45.6816143497758 | 221 | 6 | 99 | 0 | 1 | 221 | 1599677 | 1599457 | Isosphaeraceae bacterium EP7 chromosome, complete genome | blastn | 10187 | 375 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Isosphaeraceae bacterium EP7 | ||
| 9254953 | 9254953 | PRJNA1200128_S_NODE_11748_length_240_cov_1.979695_g11639_i0 | PRJNA1200128 | 11748 | 240 | 1.979695 | 4.751268 | uncultured Verrucomicrobiota bacterium | 156588 | Bacteria | Bacteria | 272 | 1.52e-68 | NTclustered | gi|226525288|gb|FJ872373.1| | 156588 | g11639 | i0 | 88.696 | 456.216666666667 | 230 | 17 | 94 | 8 | 10 | 235 | 15746 | 15522 | Uncultured Verrucomicrobia bacterium clone 118 genomic sequence | blastn | 109492 | 272 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | uncultured Verrucomicrobiota bacterium | |||||
| 10530817 | 10530817 | PRJNA1200128_S_NODE_10969_length_245_cov_2.559406_g10860_i0 | PRJNA1200128 | 10969 | 245 | 2.559406 | 6.2705447 | Isosphaeraceae bacterium EP7 | 3139350 | Bacteria | Bacteria | 420 | 5.26e-113 | NTclustered | gi|2719878338|gb|CP151667.1| | 3139350 | g10860 | i0 | 97.551 | 160.914285714286 | 245 | 6 | 100 | 0 | 1 | 245 | 1601084 | 1601328 | Isosphaeraceae bacterium EP7 chromosome, complete genome | blastn | 39424 | 420 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Isosphaeraceae bacterium EP7 | ||
| 10530837 | 10530837 | PRJNA1200128_S_NODE_15229_length_221_cov_1.848315_g15120_i0 | PRJNA1200128 | 15229 | 221 | 1.848315 | 4.08477615 | Isosphaeraceae bacterium EP7 | 3139350 | Bacteria | Bacteria | 381 | 2.2e-101 | NTclustered | gi|2719878338|gb|CP151667.1| | 3139350 | g15120 | i0 | 99.061 | 298.380090497738 | 213 | 1 | 96 | 1 | 10 | 221 | 1600081 | 1600293 | Isosphaeraceae bacterium EP7 chromosome, complete genome | blastn | 65942 | 381 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Isosphaeraceae bacterium EP7 | ||
| 11805689 | 11805689 | PRJNA1200128_S_NODE_4250_length_335_cov_1.763699_g4141_i0 | PRJNA1200128 | 4250 | 335 | 1.763699 | 5.90839165 | Nibricoccus sp. IMCC34717 | 3034021 | Bacteria | Bacteria | 490 | 5.65e-134 | NTclustered | gi|2850969968|gb|CP119759.1| | 3034021 | g4141 | i0 | 93.155 | 77.0179104477612 | 336 | 20 | 100 | 3 | 1 | 335 | 1405303 | 1404970 | Nibricoccus sp. IMCC34717 chromosome, complete genome | blastn | 25801 | 490 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Nibricoccus | Nibricoccus sp. IMCC34717 | |
| 14356130 | 14356130 | PRJNA1200128_S_NODE_6312_length_292_cov_1.385542_g6203_i0 | PRJNA1200128 | 6312 | 292 | 1.385542 | 4.04578264 | Nibricoccus aquaticus | 2576891 | Bacteria | Bacteria | 198 | 3.28e-46 | NTclustered | gi|1243404978|gb|CP023344.1| | 2576891 | g6203 | i0 | 80.228 | 1.17808219178082 | 263 | 52 | 90 | 0 | 2 | 264 | 388424 | 388686 | Nibricoccus aquaticus strain HZ-65 chromosome, complete genome | blastn | 344 | 198 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Nibricoccus | Nibricoccus aquaticus | |
| 19453120 | 19453120 | PRJNA1200128_S_NODE_25656_length_188_cov_1.751724_g25547_i0 | PRJNA1200128 | 25656 | 188 | 1.751724 | 3.29324112 | Nibricoccus sp. IMCC34717 | 3034021 | Bacteria | Bacteria | 326 | 8.6e-85 | NTclustered | gi|2850969968|gb|CP119759.1| | 3034021 | g25547 | i0 | 97.872 | 74.4840425531915 | 188 | 4 | 100 | 0 | 1 | 188 | 1405632 | 1405819 | Nibricoccus sp. IMCC34717 chromosome, complete genome | blastn | 14003 | 326 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Nibricoccus | Nibricoccus sp. IMCC34717 | |
| 19453130 | 19453130 | PRJNA1200128_S_NODE_26636_length_186_cov_1.160839_g26527_i0 | PRJNA1200128 | 26636 | 186 | 1.160839 | 2.15916054 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 193 | 8.98e-45 | NTclustered | gi|2874253952|emb|OY970277.1| | 412056 | g26527 | i0 | 85.561 | 363.60752688172 | 187 | 24 | 100 | 2 | 1 | 186 | 2749580 | 2749764 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 | blastn | 67631 | 193 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;