RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1199893" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA1199893 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
326937 326937 PRJNA1199893_P_NODE_9541_length_309_cov_1.216102_g9466_i0 PRJNA1199893 9541 309 1.216102 3.75775518 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 305 2.01e-78   NTclustered gi|695375284|ref|XM_009517214.1| 67593 g9466 i0 85.333 69.8220064724919 300 38 96 6 1 297 297 1 Phytophthora sojae hypothetical protein partial mRNA blastn 21575 305 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
16903769 16903769 PRJNA1199893_P_NODE_13374_length_260_cov_0.914439_g13299_i0 PRJNA1199893 13374 260 0.914439 2.3775414 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 226 1.32e-54   NTclustered gi|675199240|ref|XM_008910257.1| 761204 g13299 i0 86.473 12.2038461538462 207 26 79 2 1 206 1140 1345 Phytophthora parasitica INRA-310 ATP synthase subunit beta, mitochondrial mRNA blastn 3173 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;