RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1199330" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1199330 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1600693 1600693 PRJNA1199330_P_NODE_74022_length_278_cov_1.804878_g73323_i0 PRJNA1199330 74022 278 1.804878 5.01756084 Treponema socranskii 53419 Bacteria Bacteria 486 5.919999999999998e-133   NTclustered gi|2265187740|gb|CP054258.1| 69713 g73323 i0 98.201 2.73381294964029 278 5 100 0 1 278 610081 609804 Treponema socranskii subsp. buccale strain ATCC 35534 chromosome, complete genome blastn 760 486 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema socranskii
2877126 2877126 PRJNA1199330_P_NODE_89543_length_263_cov_3.236842_g88844_i0 PRJNA1199330 89543 263 3.236842 8.51289446 Treponema socranskii 53419 Bacteria Bacteria 470 5.59e-128   NTclustered gi|2265187740|gb|CP054258.1| 69713 g88844 i0 98.859 3 263 3 100 0 1 263 160260 160522 Treponema socranskii subsp. buccale strain ATCC 35534 chromosome, complete genome blastn 789 470 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema socranskii
13079486 13079486 PRJNA1199330_P_NODE_63451_length_287_cov_3.000000_g62752_i0 PRJNA1199330 63451 287 3 8.61 Treponema vincentii 69710 Bacteria Bacteria 520 6.049999999999999e-143   NTclustered gi|2265115921|gb|CP051153.1| 69710 g62752 i0 99.303 3 287 2 100 0 1 287 2016594 2016308 Treponema vincentii strain OMZ 862 chromosome, complete genome blastn 861 520 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;