RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1199330" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1199330 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
325122 325122 PRJNA1199330_P_NODE_124081_length_212_cov_4.345324_g123382_i0 PRJNA1199330 124081 212 4.345324 9.21208688 Anaeromyxobacter oryzae 2918170 Bacteria Bacteria 165 2.29e-36   NTclustered gi|2199265233|dbj|AP025591.1| 2918170 g123382 i0 81.068 92.7641509433962 206 39 97 0 7 212 443306 443511 Anaeromyxobacter oryzae DNA, complete genome blastn 19666 165 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter oryzae
22002571 22002571 PRJNA1199330_P_NODE_59398_length_291_cov_1.788991_g58699_i0 PRJNA1199330 59398 291 1.788991 5.20596381 Vulgatibacter incomptus 1391653 Bacteria Bacteria 457 4.89e-124   NTclustered gi|913607065|gb|CP012332.1| 1391653 g58699 i0 94.898 277.082474226804 294 12 100 3 1 291 179674 179381 Vulgatibacter incomptus strain DSM 27710, complete genome blastn 80631 457 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Vulgatibacteraceae Vulgatibacter Vulgatibacter incomptus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;