RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1199330" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1199330 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
324975 324975 PRJNA1199330_P_NODE_112421_length_245_cov_0.906977_g111722_i0 PRJNA1199330 112421 245 0.906977 2.22209365 Mesoplasma coleopterae 324078 Bacteria Bacteria 71.3 6.11e-8   NTclustered gi|1359436134|gb|CP022511.1| 324078 g111722 i0 89.286 4.11428571428571 56 6 23 0 2 57 578252 578197 Mesoplasma coleopterae strain BARC 781 chromosome blastn 1008 71.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma coleopterae
3594580 3594580 PRJNA1199330_P_NODE_24143_length_418_cov_1.571014_g23448_i0 PRJNA1199330 24143 418 1.571014 6.56683852 Mycoplasma 2093 Bacteria Bacteria 750 0   NTclustered gi|54609775|gb|AY765214.1| 51364 g23448 i0 99.043 187 418 4 100 0 1 418 392 809 Mycoplasma cottewii strain ATCC 43093 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 78166 750 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
20727355 20727355 PRJNA1199330_P_NODE_64757_length_286_cov_2.403756_g64058_i0 PRJNA1199330 64757 286 2.403756 6.87474216 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 89.8 2.01e-13   NTclustered gi|2187163482|emb|OV788640.1| 658143 g64058 i0 85.714 0.465034965034965 84 12 29 0 181 264 141987 142070 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 133 89.8 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;