RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1199330" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1199330 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2876686 2876686 PRJNA1199330_P_NODE_59363_length_291_cov_1.839450_g58664_i0 PRJNA1199330 59363 291 1.83945 5.3527995 Giardia muris 5742 Fornicata other_Eukaryota 538 1.6999999999999994e-148   NTclustered gi|1464306470|gb|MG708270.1| 5742 g58664 i0 100 1 291 0 100 0 1 291 3170 2880 Giardia muris Pyruvate-flavodoxin oxidoreductase (GM_15987) gene, complete cds blastn 291 538 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
13079821 13079821 PRJNA1199330_P_NODE_86091_length_267_cov_1.463918_g85392_i0 PRJNA1199330 86091 267 1.463918 3.90866106 Spironucleus muris 39710 Fornicata other_Eukaryota 446 9.589999999999998e-121   NTclustered gi|1322229|gb|U37079.1|SMU37079 39710 g85392 i0 100 79.5955056179775 241 0 90 0 1 241 241 1 Spironucleus muris alpha tubulin gene, partial cds blastn 21252 446 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus muris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;