RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1199330" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1199330 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7978299 7978299 PRJNA1199330_P_NODE_106407_length_249_cov_0.886364_g105708_i0 PRJNA1199330 106407 249 0.886364 2.20704636 Acidobacteriota bacterium 1978231 Bacteria Bacteria 444 3.18e-120   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g105708 i0 98.795 97.5100401606426 249 3 100 0 1 249 4651654 4651406 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 24280 444 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
9253092 9253092 PRJNA1199330_P_NODE_123108_length_225_cov_4.092105_g122409_i0 PRJNA1199330 123108 225 4.092105 9.20723625 Acidobacteriota bacterium 1978231 Bacteria Bacteria 411 2.869999999999999e-110   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g122409 i0 99.556 114.262222222222 225 1 100 0 1 225 4649024 4649248 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 25709 411 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
10528882 10528882 PRJNA1199330_P_NODE_116189_length_242_cov_0.923077_g115490_i0 PRJNA1199330 116189 242 0.923077 2.23384634 Acidobacteriota bacterium 1978231 Bacteria Bacteria 392 1.1299999999999999e-104   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g115490 i0 95.868 174.239669421488 242 10 100 0 1 242 4648617 4648858 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 42166 392 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
23277203 23277203 PRJNA1199330_P_NODE_113259_length_244_cov_1.426901_g112560_i0 PRJNA1199330 113259 244 1.426901 3.48163844 Acidobacteriota bacterium 1978231 Bacteria Bacteria 440 4.019999999999999e-119   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g112560 i0 99.18 458.479508196721 244 2 100 0 1 244 4649965 4650208 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 111869 440 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;