RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1199330" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA1199330 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6147213 6147213 PRJNA1199330_P_NODE_54365_length_297_cov_3.165179_g53666_i0 PRJNA1199330 54365 297 3.165179 9.40058163 Verrucomicrobiota 74201 Bacteria Bacteria 86.1 2.72e-12   NTclustered gi|2874254065|emb|OY970130.1| 412056 g53666 i0 85.366 0.552188552188552 82 12 28 0 31 112 5154017 5153936 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 164 86.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
6703317 6703317 PRJNA1199330_P_NODE_35306_length_348_cov_3.072727_g34607_i0 PRJNA1199330 35306 348 3.072727 10.69308996 Stieleria bergensis 2528025 Bacteria Bacteria 93.5 1.94e-14   NTclustered gi|1712514661|gb|CP036272.1| 2528025 g34607 i0 86.517 74.448275862069 89 7 24 4 195 279 3877843 3877756 Planctomycetes bacterium SV_7m_r chromosome blastn 25908 93.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Stieleria Stieleria bergensis
9253644 9253644 PRJNA1199330_P_NODE_48328_length_309_cov_1.906780_g47629_i0 PRJNA1199330 48328 309 1.90678 5.8919502 Aureliella helgolandensis 2527968 Bacteria Bacteria 460 4.05e-125   NTclustered gi|1712701923|gb|CP036298.1| 2527968 g47629 i0 93.811 151.608414239482 307 17 99 2 4 309 6999341 6999036 Aureliella helgolandensis strain Q31a chromosome, complete genome blastn 46847 460 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Aureliella Aureliella helgolandensis
15627836 15627836 PRJNA1199330_P_NODE_11593_length_608_cov_2.428037_g10920_i0 PRJNA1199330 11593 608 2.428037 14.76246496 Aureliella helgolandensis 2527968 Bacteria Bacteria 918 0   NTclustered gi|1712701923|gb|CP036298.1| 2527968 g10920 i0 95.377 112.524671052632 584 15 94 6 1 573 7000096 6999514 Aureliella helgolandensis strain Q31a chromosome, complete genome blastn 68415 918 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Aureliella Aureliella helgolandensis
18176644 18176644 PRJNA1199330_P_NODE_113395_length_244_cov_0.912281_g112696_i0 PRJNA1199330 113395 244 0.912281 2.22596564 uncultured Planctomycetota bacterium 120965 Bacteria Bacteria 351 1.9399999999999998e-92   NTclustered gi|576901465|gb|KF827058.1| 120965 g112696 i0 100 90.7581967213115 190 0 78 0 55 244 1400 1211 Uncultured planctomycete clone B-30-43 16S ribosomal RNA gene, partial sequence blastn 22145 351 1 Bacteria PVC group Pseudomonadati Planctomycetota         uncultured Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;