RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1198392" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1198392 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
324776 324776 PRJNA1198392_P_NODE_8981_length_287_cov_1.439252_g8840_i0 PRJNA1198392 8981 287 1.439252 4.13065324 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 455 1.73e-123   NTclustered gi|166039156|emb|CU355206.1| 100861 g8840 i0 95.439 17.4878048780488 285 13 99 0 3 287 457 741 Aphanomyces euteiches cDNA blastn 5019 455 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
7977950 7977950 PRJNA1198392_P_NODE_17747_length_248_cov_0.880000_g17606_i0 PRJNA1198392 17747 248 0.88 2.1824 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 381 2.519999999999999e-101   NTclustered gi|166039156|emb|CU355206.1| 100861 g17606 i0 94.355 3.92338709677419 248 14 100 0 1 248 182 429 Aphanomyces euteiches cDNA blastn 973 381 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
10528532 10528532 PRJNA1198392_P_NODE_5349_length_345_cov_1.562500_g5208_i0 PRJNA1198392 5349 345 1.5625 5.390625 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 377 4.74e-100   NTclustered gi|698802575|ref|XM_009836015.1| 112090 g5208 i0 86.905 11.8 336 44 97 0 10 345 621 286 Aphanomyces astaci hypothetical protein mRNA blastn 4071 377 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
19450645 19450645 PRJNA1198392_P_NODE_18936_length_245_cov_1.366279_g18795_i0 PRJNA1198392 18936 245 1.366279 3.34738355 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 126 1.28e-24   NTclustered gi|673016233|ref|XM_008863856.1| 157072 g18795 i0 79 1.63265306122449 200 30 79 8 44 237 389 196 Aphanomyces invadans hypothetical protein mRNA blastn 400 126 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
22001478 22001478 PRJNA1198392_P_NODE_6318_length_322_cov_1.851406_g6177_i0 PRJNA1198392 6318 322 1.851406 5.96152732 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 573 5.219999999999998e-159   NTclustered gi|325194231|emb|FR825088.1| 890382 g6177 i0 98.758 2.10869565217391 322 4 100 0 1 322 1535 1214 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 679 573 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
24550945 24550945 PRJNA1198392_P_NODE_9360_length_285_cov_1.452830_g9219_i0 PRJNA1198392 9360 285 1.45283 4.1405655 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 180 1.16e-40   NTclustered gi|813141828|ref|XM_012343699.1| 695850 g9219 i0 79.545 0.926315789473684 264 44 91 8 15 273 69 327 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 264 180 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;