RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1198392" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1198392 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2875574 2875574 PRJNA1198392_P_NODE_7283_length_304_cov_1.307359_g7142_i0 PRJNA1198392 7283 304 1.307359 3.97437136 Rhizopus stolonifer 4846 Fungi Fungi 507 5.03e-139   NTclustered gi|82398553|gb|DQ273817.1| 4846 g7142 i0 99.639 91.7335526315789 277 1 91 0 1 277 2783 2507 Rhizopus stolonifer isolate AFTOL-ID 632 28S ribosomal RNA gene, partial sequence blastn 27887 507 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
13078048 13078048 PRJNA1198392_P_NODE_1191_length_690_cov_1.784441_g1055_i0 PRJNA1198392 1191 690 1.784441 12.3126429 Rhizopus stolonifer 4846 Fungi Fungi 1264 0   NTclustered gi|82398553|gb|DQ273817.1| 4846 g1055 i0 99.71 88.4014492753623 690 2 100 0 1 690 2238 1549 Rhizopus stolonifer isolate AFTOL-ID 632 28S ribosomal RNA gene, partial sequence blastn 60997 1264 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
23995870 23995870 PRJNA1198392_P_NODE_10679_length_279_cov_1.495146_g10538_i0 PRJNA1198392 10679 279 1.495146 4.17145734 Rhizopus 4842 Fungi Fungi 516 7.58e-142   NTclustered gi|1493534650|gb|MK070014.1| 4846 g10538 i0 100 98.0358422939068 279 0 100 0 1 279 14 292 Rhizopus stolonifer strain M7RJF large subunit ribosomal RNA gene, partial sequence blastn 27352 516 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
23995887 23995887 PRJNA1198392_P_NODE_15279_length_253_cov_2.566667_g15138_i0 PRJNA1198392 15279 253 2.566667 6.49366751 Mucorales 4827 Fungi Fungi 468 1.92e-127   NTclustered gi|734668976|gb|KJ408540.1| 4846 g15138 i0 100 100 253 0 100 0 1 253 5 257 Rhizopus stolonifer strain FSU9872 18S ribosomal RNA gene, partial sequence blastn 25300 468 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
23995908 23995908 PRJNA1198392_P_NODE_2279_length_491_cov_1.672249_g2138_i0 PRJNA1198392 2279 491 1.672249 8.21074259 Mucorales 4827 Fungi Fungi 124 1e-23   NTclustered gi|82398553|gb|DQ273817.1| 4846 g2138 i0 86.207 2.61303462321792 116 14 23 2 44 158 1546 1660 Rhizopus stolonifer isolate AFTOL-ID 632 28S ribosomal RNA gene, partial sequence blastn 1283 124 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;