RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1198392" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1198392 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9252432 9252432 PRJNA1198392_P_NODE_14068_length_261_cov_1.638298_g13927_i0 PRJNA1198392 14068 261 1.638298 4.27595778 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 320 5.91e-83   NTclustered gi|575456455|gb|CP007128.1| 861299 g13927 i0 89.231 191.915708812261 260 22 99 5 4 261 3043615 3043360 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 50090 320 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
13078065 13078065 PRJNA1198392_P_NODE_12931_length_268_cov_1.184615_g12790_i0 PRJNA1198392 12931 268 1.184615 3.1747682 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 403 5.88e-108   NTclustered gi|2874253978|emb|OY970303.1| 412054 g12790 i0 94.961 247.011194029851 258 12 96 1 1 257 1904309 1904052 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 66199 403 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16901809 16901809 PRJNA1198392_P_NODE_21054_length_241_cov_1.672619_g20913_i0 PRJNA1198392 21054 241 1.672619 4.03101179 uncultured Gemmatimonadota bacterium 203437 Bacteria Bacteria 326 1.16e-84   NTclustered gi|451919023|gb|KC452887.1| 203437 g20913 i0 91.949 98.149377593361 236 14 96 4 10 241 79 313 Uncultured Gemmatimonadetes bacterium clone RLBp2779 16S ribosomal RNA gene, partial sequence blastn 23654 326 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         uncultured Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;