contig_metadata
23 rows where analysis = "blastn", bioproject = "PRJNA1198392" and tax_kingdom = "Fusobacteriati"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1043767 | 1043767 | PRJNA1198392_P_NODE_11161_length_277_cov_1.132353_g11020_i0 | PRJNA1198392 | 11161 | 277 | 1.132353 | 3.13661781 | Fusobacterium | 848 | Bacteria | Bacteria | 512 | 9.73e-141 | NTclustered | gi|958157244|gb|CP013336.1| | 1307443 | g11020 | i0 | 100 | 56.5415162454874 | 277 | 0 | 100 | 0 | 1 | 277 | 2222479 | 2222203 | Fusobacterium hwasookii ChDC F206, complete genome | blastn | 15662 | 512 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium hwasookii | ||
| 2319084 | 2319084 | PRJNA1198392_P_NODE_19062_length_245_cov_0.895349_g18921_i0 | PRJNA1198392 | 19062 | 245 | 0.895349 | 2.19360505 | Leptotrichia | 32067 | Bacteria | Bacteria | 403 | 5.299999999999998e-108 | NTclustered | gi|1708566027|dbj|AP019823.1| | 157688 | g18921 | i0 | 96.327 | 12.8326530612245 | 245 | 9 | 100 | 0 | 1 | 245 | 542380 | 542624 | Leptotrichia hofstadii JCM16775 DNA, complete genome | blastn | 3144 | 403 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia hofstadii | ||
| 2875225 | 2875225 | PRJNA1198392_P_NODE_11543_length_275_cov_1.222772_g11402_i0 | PRJNA1198392 | 11543 | 275 | 1.222772 | 3.362623 | Fusobacterium hwasookii | 1583098 | Bacteria | Bacteria | 503 | 5.809999999999998e-138 | NTclustered | gi|958159838|gb|CP013334.1| | 1307444 | g11402 | i0 | 99.636 | 27.9854545454545 | 275 | 1 | 100 | 0 | 1 | 275 | 1149936 | 1149662 | Fusobacterium hwasookii ChDC F300, complete genome | blastn | 7696 | 503 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium hwasookii | ||
| 4151355 | 4151355 | PRJNA1198392_P_NODE_12184_length_271_cov_1.636364_g12043_i0 | PRJNA1198392 | 12184 | 271 | 1.636364 | 4.43454644 | Leptotrichia hofstadii | 157688 | Bacteria | Bacteria | 496 | 9.55e-136 | NTclustered | gi|1708566027|dbj|AP019823.1| | 157688 | g12043 | i0 | 99.631 | 194.546125461255 | 271 | 1 | 100 | 0 | 1 | 271 | 577512 | 577242 | Leptotrichia hofstadii JCM16775 DNA, complete genome | blastn | 52722 | 496 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia hofstadii | ||
| 4151491 | 4151491 | PRJNA1198392_P_NODE_16964_length_249_cov_0.875000_g16823_i0 | PRJNA1198392 | 16964 | 249 | 0.875 | 2.17875 | Fusobacterium nucleatum | 851 | Bacteria | Bacteria | 460 | 3.16e-125 | NTclustered | gi|2704996929|gb|CP077149.1| | 851 | g16823 | i0 | 100 | 99.7751004016064 | 249 | 0 | 100 | 0 | 1 | 249 | 581111 | 580863 | Fusobacterium nucleatum strain KCOM2013 chromosome, complete genome | blastn | 24844 | 460 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum | ||
| 6702292 | 6702292 | PRJNA1198392_P_NODE_12566_length_269_cov_2.331633_g12425_i0 | PRJNA1198392 | 12566 | 269 | 2.331633 | 6.27209277 | Leptotrichia buccalis | 40542 | Bacteria | Bacteria | 459 | 1.2399999999999996e-124 | NTclustered | gi|257048753|gb|CP001685.1| | 523794 | g12425 | i0 | 97.398 | 15.0557620817844 | 269 | 7 | 100 | 0 | 1 | 269 | 2352829 | 2353097 | Leptotrichia buccalis DSM 1135, complete genome | blastn | 4050 | 459 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia buccalis | ||
| 6702424 | 6702424 | PRJNA1198392_P_NODE_18686_length_246_cov_0.890173_g18545_i0 | PRJNA1198392 | 18686 | 246 | 0.890173 | 2.18982558 | Fusobacterium pseudoperiodonticum | 2663009 | Bacteria | Bacteria | 427 | 3.16e-115 | NTclustered | gi|1276716588|gb|CP024703.1| | 2663009 | g18545 | i0 | 97.967 | 8.0609756097561 | 246 | 5 | 100 | 0 | 1 | 246 | 991636 | 991881 | Fusobacterium pseudoperiodonticum strain KCOM 2305 chromosome, complete genome | blastn | 1983 | 427 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium pseudoperiodonticum | ||
| 8696730 | 8696730 | PRJNA1198392_P_NODE_16407_length_250_cov_0.870056_g16266_i0 | PRJNA1198392 | 16407 | 250 | 0.870056 | 2.17514 | Leptotrichia | 32067 | Bacteria | Bacteria | 420 | 5.389999999999998e-113 | NTclustered | gi|470484715|ref|NR_076664.1| | 40542 | g16266 | i0 | 97.571 | 485.06 | 247 | 3 | 98 | 2 | 6 | 250 | 918 | 673 | Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence | blastn | 121265 | 420 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia buccalis | ||
| 9252487 | 9252487 | PRJNA1198392_P_NODE_16568_length_250_cov_0.870056_g16427_i0 | PRJNA1198392 | 16568 | 250 | 0.870056 | 2.17514 | Leptotrichia sp. oral taxon 498 | 712368 | Bacteria | Bacteria | 457 | 4.1099999999999985e-124 | NTclustered | gi|1227268105|gb|CP016753.1| | 712368 | g16427 | i0 | 99.6 | 4 | 250 | 1 | 100 | 0 | 1 | 250 | 335375 | 335126 | Leptotrichia sp. oral taxon 498, complete genome | blastn | 1000 | 457 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 498 | ||
| 9252629 | 9252629 | PRJNA1198392_P_NODE_2908_length_440_cov_2.267030_g2767_i0 | PRJNA1198392 | 2908 | 440 | 2.26703 | 9.974932 | Leptotrichia sp. oral taxon 212 | 712357 | Bacteria | Bacteria | 741 | 0 | NTclustered | gi|922689899|gb|CP012410.1| | 712357 | g2767 | i0 | 97.045 | 475.122727272727 | 440 | 13 | 100 | 0 | 1 | 440 | 54040 | 53601 | Leptotrichia sp. oral taxon 212 strain W10393, complete genome | blastn | 209054 | 741 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 212 | ||
| 11247027 | 11247027 | PRJNA1198392_P_NODE_11629_length_274_cov_1.532338_g11488_i0 | PRJNA1198392 | 11629 | 274 | 1.532338 | 4.19860612 | Leptotrichia | 32067 | Bacteria | Bacteria | 507 | 4.47e-139 | NTclustered | gi|290759860|gb|GU561361.1| | 40542 | g11488 | i0 | 100 | 108.040145985401 | 274 | 0 | 100 | 0 | 1 | 274 | 1293 | 1020 | Leptotrichia buccalis strain GEJ9 16S ribosomal RNA gene, partial sequence | blastn | 29603 | 507 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia buccalis | ||
| 11802968 | 11802968 | PRJNA1198392_P_NODE_12170_length_271_cov_1.944444_g12029_i0 | PRJNA1198392 | 12170 | 271 | 1.944444 | 5.26944324 | Fusobacterium pseudoperiodonticum | 2663009 | Bacteria | Bacteria | 501 | 2.05e-137 | NTclustered | gi|2705022034|gb|CP084128.1| | 2663009 | g12029 | i0 | 100 | 13.7269372693727 | 271 | 0 | 100 | 0 | 1 | 271 | 2030280 | 2030550 | Fusobacterium pseudoperiodonticum strain KCOM1322 chromosome, complete genome | blastn | 3720 | 501 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium pseudoperiodonticum | ||
| 13078429 | 13078429 | PRJNA1198392_P_NODE_9271_length_286_cov_1.122066_g9130_i0 | PRJNA1198392 | 9271 | 286 | 1.122066 | 3.20910876 | Fusobacterium animalis | 76859 | Bacteria | Bacteria | 187 | 6.9399999999999985e-43 | NTclustered | gi|2704961909|gb|CP056024.1| | 76859 | g9130 | i0 | 99.038 | 18.8461538461538 | 104 | 1 | 36 | 0 | 1 | 104 | 1043763 | 1043660 | Fusobacterium animalis strain SB001 chromosome, complete genome | blastn | 5390 | 187 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium animalis | ||
| 14353557 | 14353557 | PRJNA1198392_P_NODE_17212_length_249_cov_0.875000_g17071_i0 | PRJNA1198392 | 17212 | 249 | 0.875 | 2.17875 | Fusobacterium pseudoperiodonticum | 2663009 | Bacteria | Bacteria | 460 | 3.16e-125 | NTclustered | gi|1276718681|gb|CP024704.1| | 2663009 | g17071 | i0 | 100 | 99.9919678714859 | 249 | 0 | 100 | 0 | 1 | 249 | 605505 | 605753 | Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome | blastn | 24898 | 460 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium pseudoperiodonticum | ||
| 15627326 | 15627326 | PRJNA1198392_P_NODE_15833_length_251_cov_0.865169_g15692_i0 | PRJNA1198392 | 15833 | 251 | 0.865169 | 2.17157419 | Fusobacterium polymorphum | 76857 | Bacteria | Bacteria | 431 | 2.4999999999999996e-116 | NTclustered | gi|2706071841|gb|CP077111.1| | 76857 | g15692 | i0 | 97.61 | 77.7609561752988 | 251 | 6 | 100 | 0 | 1 | 251 | 1128173 | 1128423 | Fusobacterium polymorphum strain KCOM1275 chromosome, complete genome | blastn | 19518 | 431 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 16901568 | 16901568 | PRJNA1198392_P_NODE_10694_length_279_cov_1.495146_g10553_i0 | PRJNA1198392 | 10694 | 279 | 1.495146 | 4.17145734 | Leptotrichia sp. oral taxon 498 | 712368 | Bacteria | Bacteria | 516 | 7.58e-142 | NTclustered | gi|1227268105|gb|CP016753.1| | 712368 | g10553 | i0 | 100 | 147.405017921147 | 279 | 0 | 100 | 0 | 1 | 279 | 593111 | 592833 | Leptotrichia sp. oral taxon 498, complete genome | blastn | 41126 | 516 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 498 | ||
| 19450708 | 19450708 | PRJNA1198392_P_NODE_21316_length_241_cov_0.916667_g21175_i0 | PRJNA1198392 | 21316 | 241 | 0.916667 | 2.20916747 | Leptotrichia trevisanii | 109328 | Bacteria | Bacteria | 412 | 8.64e-111 | NTclustered | gi|1708584775|dbj|AP019845.1| | 109328 | g21175 | i0 | 97.51 | 12.9294605809129 | 241 | 6 | 100 | 0 | 1 | 241 | 593739 | 593979 | Leptotrichia trevisanii JMUB4039 DNA, complete genome | blastn | 3116 | 412 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia trevisanii | ||
| 22001183 | 22001183 | PRJNA1198392_P_NODE_12198_length_271_cov_1.555556_g12057_i0 | PRJNA1198392 | 12198 | 271 | 1.555556 | 4.21555676 | Fusobacterium pseudoperiodonticum | 2663009 | Bacteria | Bacteria | 496 | 9.55e-136 | NTclustered | gi|1276705688|gb|CP024698.1| | 2663009 | g12057 | i0 | 99.631 | 100 | 271 | 1 | 100 | 0 | 1 | 271 | 1292872 | 1292602 | Fusobacterium pseudoperiodonticum strain KCOM 1283 chromosome, complete genome | blastn | 27100 | 496 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium pseudoperiodonticum | ||
| 22001237 | 22001237 | PRJNA1198392_P_NODE_14698_length_257_cov_1.673913_g14557_i0 | PRJNA1198392 | 14698 | 257 | 1.673913 | 4.30195641 | Leptotrichia hongkongensis | 554406 | Bacteria | Bacteria | 418 | 1.9999999999999994e-112 | NTclustered | gi|1708587163|dbj|AP019846.1| | 554406 | g14557 | i0 | 96.094 | 16.2645914396887 | 256 | 10 | 99 | 0 | 1 | 256 | 2231109 | 2230854 | Leptotrichia hongkongensis JMUB5056 DNA, complete genome | blastn | 4180 | 418 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia hongkongensis | ||
| 23276701 | 23276701 | PRJNA1198392_P_NODE_15019_length_255_cov_1.692308_g14878_i0 | PRJNA1198392 | 15019 | 255 | 1.692308 | 4.3153854 | Fusobacterium animalis | 76859 | Bacteria | Bacteria | 466 | 6.98e-127 | NTclustered | gi|2706471657|gb|CP084079.1| | 76859 | g14878 | i0 | 99.608 | 65.3490196078431 | 255 | 1 | 100 | 0 | 1 | 255 | 1774745 | 1774491 | Fusobacterium animalis strain SB052 chromosome, complete genome | blastn | 16664 | 466 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium animalis | ||
| 23276829 | 23276829 | PRJNA1198392_P_NODE_20599_length_242_cov_0.911243_g20458_i0 | PRJNA1198392 | 20599 | 242 | 0.911243 | 2.20520806 | Pseudoleptotrichia goodfellowii | 157692 | Bacteria | Bacteria | 303 | 5.45e-78 | NTclustered | gi|1708563796|dbj|AP019822.1| | 157692 | g20458 | i0 | 89.54 | 1.97520661157025 | 239 | 25 | 99 | 0 | 2 | 240 | 323610 | 323372 | Leptotrichia goodfellowii JCM16774 DNA, complete genome | blastn | 478 | 303 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Pseudoleptotrichia | Pseudoleptotrichia goodfellowii | ||
| 23995906 | 23995906 | PRJNA1198392_P_NODE_20579_length_242_cov_0.911243_g20438_i0 | PRJNA1198392 | 20579 | 242 | 0.911243 | 2.20520806 | Fusobacterium | 848 | Bacteria | Bacteria | 442 | 1.1099999999999995e-119 | NTclustered | gi|2706407748|gb|CP077116.1| | 76857 | g20438 | i0 | 99.587 | 498.962809917355 | 242 | 1 | 100 | 0 | 1 | 242 | 190836 | 191077 | Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome | blastn | 120749 | 442 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 24550646 | 24550646 | PRJNA1198392_P_NODE_14880_length_256_cov_1.683060_g14739_i0 | PRJNA1198392 | 14880 | 256 | 1.68306 | 4.3086336 | Leptotrichia sp. HMT-225 | 3058373 | Bacteria | Bacteria | 460 | 3.2599999999999995e-125 | NTclustered | gi|2557559843|gb|CP130323.1| | 3058373 | g14739 | i0 | 99.219 | 8.1171875 | 256 | 1 | 100 | 1 | 1 | 256 | 848217 | 847963 | Leptotrichia sp. HMT-225 chromosome, complete genome | blastn | 2078 | 460 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. HMT-225 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;