RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1198392" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1198392 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10528313 10528313 PRJNA1198392_P_NODE_14709_length_257_cov_1.673913_g14568_i0 PRJNA1198392 14709 257 1.673913 4.30195641 Chlamydomonas reinhardtii 3055 Plants Plants 58.4 5.02e-4   NTclustered gi|2082258307|ref|XM_043067377.1| 3055 g14568 i0 100 5.29961089494163 31 0 12 0 29 59 4967 4997 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g467624v5), mRNA blastn 1362 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15627213 15627213 PRJNA1198392_P_NODE_11053_length_277_cov_1.509804_g10912_i0 PRJNA1198392 11053 277 1.509804 4.18215708 Coccomyxa subellipsoidea 248742 Plants Plants 52.8 0.025   NTclustered gi|545355675|ref|XM_005643557.1| 574566 g10912 i0 100 0.101083032490975 28 0 10 0 168 195 4945 4972 Coccomyxa subellipsoidea C-169 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
19450458 19450458 PRJNA1198392_P_NODE_11176_length_276_cov_3.428571_g11035_i0 PRJNA1198392 11176 276 3.428571 9.46285596 Volvox carteri 3067 Plants Plants 137 6.81e-28   NTclustered gi|302828447|ref|XM_002945745.1| 3068 g11035 i0 87.395 2.08695652173913 119 15 43 0 158 276 1470 1352 Volvox carteri f. nagariensis eukaryotic translation initiation factor 1 alpha 1 (eif1A1), mRNA blastn 576 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;