RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1198392" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA1198392 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2319083 2319083 PRJNA1198392_P_NODE_18382_length_246_cov_1.780347_g18241_i0 PRJNA1198392 18382 246 1.780347 4.37965362 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 104 6.05e-18   NTclustered gi|2414483|emb|Y00055.1| 5656 g18241 i0 79.085 68.7845528455285 153 30 62 2 94 246 7316 7166 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 16921 104 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
2875371 2875371 PRJNA1198392_P_NODE_17883_length_247_cov_1.540230_g17742_i0 PRJNA1198392 17883 247 1.54023 3.8043681 Peranema sp. CB 131838 1759665 Euglenozoa other_Eukaryota 435 1.9e-117   NTclustered gi|959455953|gb|KT588860.1| 1759665 g17742 i0 98.381 3.63157894736842 247 4 100 0 1 247 882 636 Peranema sp. CB 131838 glyceraldehyde 3-phosphate dehydrogenase mRNA, partial cds blastn 897 435 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema sp. CB 131838
4871851 4871851 PRJNA1198392_P_NODE_19884_length_244_cov_0.900585_g19743_i0 PRJNA1198392 19884 244 0.900585 2.1974274 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 333 7.019999999999999e-87   NTclustered gi|2026667530|dbj|LC618030.1| 67003 g19743 i0 96.078 128.852459016393 204 8 84 0 1 204 4499 4702 Trypanosoma theileri YMG-11 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, ITS5, partial and complete sequence blastn 31440 333 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
10528528 10528528 PRJNA1198392_P_NODE_5169_length_349_cov_2.000000_g5028_i0 PRJNA1198392 5169 349 2 6.98 Bodo saltans 75058 Euglenozoa other_Eukaryota 279 1.39e-70   NTclustered gi|302026180|gb|GQ377699.1| 75058 g5028 i0 82.263 95.2664756446991 327 54 93 3 1 325 911 1235 Bodo saltans elongation factor 1 alpha mRNA, complete cds blastn 33248 279 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
15071450 15071450 PRJNA1198392_P_NODE_13392_length_265_cov_1.604167_g13251_i0 PRJNA1198392 13392 265 1.604167 4.25104255 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 440 4.419999999999998e-119   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g13251 i0 99.585 72.0037735849057 241 1 91 0 1 241 1748 1988 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 19081 440 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
23276721 23276721 PRJNA1198392_P_NODE_15819_length_251_cov_0.865169_g15678_i0 PRJNA1198392 15819 251 0.865169 2.17157419 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 459 1.1499999999999996e-124   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g15678 i0 99.602 66.0996015936255 251 1 100 0 1 251 2897 2647 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16591 459 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
24550950 24550950 PRJNA1198392_P_NODE_9560_length_284_cov_1.815166_g9419_i0 PRJNA1198392 9560 284 1.815166 5.15507144 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 514 2.78e-141   NTclustered gi|27461806|gb|AY130826.1| 56466 g9419 i0 99.296 1 284 2 100 0 1 284 1283 1000 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 284 514 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;