RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1198392" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1198392 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6146589 6146589 PRJNA1198392_P_NODE_17985_length_247_cov_0.885057_g17844_i0 PRJNA1198392 17985 247 0.885057 2.18609079 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 431 2.45e-116   NTclustered gi|909719645|gb|KT185625.1| 5778 g17844 i0 98.367 35.5789473684211 245 4 99 0 1 245 3562 3806 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 8788 431 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9252448 9252448 PRJNA1198392_P_NODE_14708_length_257_cov_1.673913_g14567_i0 PRJNA1198392 14708 257 1.673913 4.30195641 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 431 2.57e-116   NTclustered gi|470525569|ref|XM_004356569.1| 1257118 g14567 i0 96.887 1.45525291828794 257 8 100 0 1 257 679 935 Acanthamoeba castellanii str. Neff mitochondrial phosphate transporter, putative (ACA1_173800), partial mRNA blastn 374 431 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11803220 11803220 PRJNA1198392_P_NODE_2570_length_464_cov_1.181586_g2429_i0 PRJNA1198392 2570 464 1.181586 5.48255904 Dictyostelium discoideum 44689 Evosea other_Eukaryota 560 6.06e-155   NTclustered gi|66821326|ref|XM_639065.1| 352472 g2429 i0 88.962 95.8383620689655 453 50 98 0 12 464 1131 679 Dictyostelium discoideum AX4 hypothetical protein (act13) mRNA, complete cds blastn 44469 560 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
15627317 15627317 PRJNA1198392_P_NODE_15413_length_252_cov_3.284916_g15272_i0 PRJNA1198392 15413 252 3.284916 8.27798832 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 313 9.49e-81   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g15272 i0 92.627 0.861111111111111 217 16 86 0 1 217 4255 4039 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 217 313 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;