RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1197996" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1197996 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6146496 6146496 PRJNA1197996_S_NODE_27365_length_243_cov_1.358824_g27311_i0 PRJNA1197996 27365 243 1.358824 3.30194232 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.022   NTclustered gi|1376152721|ref|XM_024644931.1| 34506 g27311 i0 100 0.345679012345679 28 0 12 0 99 126 581 608 Strongyloides ratti Paired domain and Homeodomain-like and Winged helix-turn-helix DNA-binding domain-containing protein (SRAE_X000057000), partial mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24550004 24550004 PRJNA1197996_S_NODE_13800_length_302_cov_1.397380_g13746_i0 PRJNA1197996 13800 302 1.39738 4.2200876 Strongyloides ratti 34506 Nematoda Nematoda 213 1.22e-50   NTclustered gi|1376144029|ref|XM_024652443.1| 34506 g13746 i0 79.47 44.6523178807947 302 60 99 2 1 301 185 485 Strongyloides ratti Tubulin beta-2A chain (SRAE_2000148500), partial mRNA blastn 13485 213 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;