RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1197996" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1197996 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1598575 1598575 PRJNA1197996_S_NODE_17262_length_281_cov_1.062500_g17208_i0 PRJNA1197996 17262 281 1.0625 2.985625 Myxococcales bacterium 2026763 Bacteria Bacteria 274 5.08e-69   NTclustered gi|2258824976|gb|CP060221.1| 2026763 g17208 i0 85.496 237.177935943061 262 38 93 0 1 262 1313248 1313509 MAG: Myxococcales bacterium isolate HK-STAS-MYXO-35 chromosome, complete genome blastn 66647 274 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
5427018 5427018 PRJNA1197996_S_NODE_12905_length_308_cov_1.940426_g12851_i0 PRJNA1197996 12905 308 1.940426 5.97651208 Labilithrix luteola 1391654 Bacteria Bacteria 366 9.039999999999999e-97   NTclustered gi|913610804|gb|CP012333.1| 1391654 g12851 i0 88.179 114.805194805195 313 29 100 6 1 308 3943010 3943319 Labilithrix luteola strain DSM 27648, complete genome blastn 35360 366 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22001016 22001016 PRJNA1197996_S_NODE_5278_length_407_cov_1.529940_g5224_i0 PRJNA1197996 5278 407 1.52994 6.2268558 Labilithrix luteola 1391654 Bacteria Bacteria 582 1.1199999999999999e-161   NTclustered gi|913610804|gb|CP012333.1| 1391654 g5224 i0 92.982 132.724815724816 399 28 98 0 9 407 3942500 3942102 Labilithrix luteola strain DSM 27648, complete genome blastn 54019 582 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;