RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1197996" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1197996 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5427168 5427168 PRJNA1197996_S_NODE_18785_length_272_cov_7.512563_g18731_i0 PRJNA1197996 18785 272 7.512563 20.43417136 Tritrichomonas muris 5726 Parabasalia other_Eukaryota 350 7.9e-92   NTclustered gi|10747|emb|Z18255.1| 5726 g18731 i0 90.875 26.8455882352941 263 21 96 2 9 270 1 261 Tritrichomonas muris 28S ribosomal RNA blastn 7302 350 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
5427530 5427530 PRJNA1197996_S_NODE_8265_length_355_cov_1.241135_g8211_i0 PRJNA1197996 8265 355 1.241135 4.40602925 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 544 4.55e-150   NTclustered gi|2274983416|gb|OP038912.1| 5725 g8211 i0 94.587 8.50985915492958 351 19 99 0 1 351 743 1093 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 3021 544 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;