RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1197996" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1197996 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7421517 7421517 PRJNA1197996_S_NODE_20666_length_263_cov_2.326316_g20612_i0 PRJNA1197996 20666 263 2.326316 6.11821108 Naegleria 5761 Heterolobosea other_Eukaryota 481 2.58e-131   NTclustered gi|2618963742|gb|OR769034.1| 5762 g20612 i0 99.62 37.467680608365 263 1 100 0 1 263 5067 5329 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 9854 481 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14353234 14353234 PRJNA1197996_S_NODE_3172_length_479_cov_1.677340_g3119_i0 PRJNA1197996 3172 479 1.67734 8.0344586 Phanerobia pelophila 259045 Euglenozoa other_Eukaryota 839 0   NTclustered gi|41400284|gb|AY425020.1| 259045 g3119 i0 98.33 91.2025052192067 479 7 100 1 1 479 1232 755 Phanerobia pelophila 18S ribosomal RNA gene, partial sequence blastn 43686 839 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Phanerobia Phanerobia pelophila
20725524 20725524 PRJNA1197996_S_NODE_28337_length_241_cov_1.672619_g28283_i0 PRJNA1197996 28337 241 1.672619 4.03101179 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 196 9.47e-46   NTclustered gi|2124403222|ref|XM_044685950.1| 51637 g28283 i0 81.328 11.2863070539419 241 45 100 0 1 241 996 1236 Naegleria lovaniensis uncharacterized protein (C9374_010409), partial mRNA blastn 2720 196 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;