RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1197996" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1197996 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4871744 4871744 PRJNA1197996_S_NODE_24944_length_248_cov_0.880000_g24890_i0 PRJNA1197996 24944 248 0.88 2.1824 Physaraceae 1115744 Evosea other_Eukaryota 204 5.849999999999999e-48   NTclustered gi|374255710|emb|HE614610.2| 227449 g24890 i0 82.573 32.0967741935484 241 32 95 8 1 235 1389 1153 Badhamia gracilis partial 18S rRNA gene, strain Az4-1 blastn 7960 204 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Badhamia Badhamia gracilis
6702007 6702007 PRJNA1197996_S_NODE_26106_length_246_cov_0.890173_g26052_i0 PRJNA1197996 26106 246 0.890173 2.18982558 Vannella sp. strain CH88/I 325078 Discosea other_Eukaryota 392 1.15e-104   NTclustered gi|62865937|gb|AY929912.1| 325078 g26052 i0 99.535 60.2682926829268 215 1 87 0 1 215 398 184 Vannella sp. strain CH88/I 18S small subunit ribosomal RNA gene, partial sequence blastn 14826 392 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CH88/I
24550350 24550350 PRJNA1197996_S_NODE_28700_length_241_cov_0.916667_g28646_i0 PRJNA1197996 28700 241 0.916667 2.20916747 Physarum polycephalum 5791 Evosea other_Eukaryota 254 5.54e-63   NTclustered gi|5764666|gb|AF177283.1|AF177283 5791 g28646 i0 85.833 2.37759336099585 240 32 99 2 1 239 227 465 Physarum polycephalum putative ribosomal protein S11 mRNA, partial cds blastn 573 254 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;