contig_metadata
7 rows where analysis = "blastn", bioproject = "PRJNA1196438" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5426790 | 5426790 | PRJNA1196438_P_NODE_77005_length_240_cov_3.502994_g76578_i0 | PRJNA1196438 | 77005 | 240 | 3.502994 | 8.4071856 | Treponema sp. OMZ 305 | 1659192 | Bacteria | Bacteria | 411 | 3.089999999999999e-110 | NTclustered | gi|2265133351|gb|CP051300.1| | 1659192 | g76578 | i0 | 97.5 | 10 | 240 | 6 | 100 | 0 | 1 | 240 | 1710629 | 1710868 | Treponema sp. OMZ 305 chromosome, complete genome | blastn | 2400 | 411 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 305 | ||
| 10527300 | 10527300 | PRJNA1196438_P_NODE_73389_length_244_cov_2.280702_g72962_i0 | PRJNA1196438 | 73389 | 244 | 2.280702 | 5.56491288 | Treponema brennaborense | 81028 | Bacteria | Bacteria | 193 | 1.24e-44 | NTclustered | gi|332179772|gb|CP002696.1| | 906968 | g72962 | i0 | 81.328 | 2.11885245901639 | 241 | 41 | 98 | 4 | 2 | 240 | 2085282 | 2085520 | Treponema brennaborense DSM 12168, complete genome | blastn | 517 | 193 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema brennaborense | ||
| 13076729 | 13076729 | PRJNA1196438_P_NODE_44091_length_282_cov_2.909091_g43664_i0 | PRJNA1196438 | 44091 | 282 | 2.909091 | 8.20363662 | Treponema denticola | 158 | Bacteria | Bacteria | 486 | 6.019999999999998e-133 | NTclustered | gi|2265178430|gb|CP051633.1| | 158 | g43664 | i0 | 97.865 | 22.1560283687943 | 281 | 6 | 99 | 0 | 1 | 281 | 675578 | 675858 | Treponema denticola strain OMZ 898 chromosome, complete genome | blastn | 6248 | 486 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 14352010 | 14352010 | PRJNA1196438_P_NODE_29712_length_301_cov_3.057018_g29286_i0 | PRJNA1196438 | 29712 | 301 | 3.057018 | 9.20162418 | Treponema denticola | 158 | Bacteria | Bacteria | 285 | 2.54e-72 | NTclustered | gi|2265193197|gb|CP058347.1| | 158 | g29286 | i0 | 97.59 | 27.4584717607973 | 166 | 4 | 100 | 0 | 136 | 301 | 682592 | 682757 | Treponema denticola strain OKA3 chromosome, complete genome | blastn | 8265 | 285 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 18174878 | 18174878 | PRJNA1196438_P_NODE_54055_length_267_cov_1.608247_g53628_i0 | PRJNA1196438 | 54055 | 267 | 1.608247 | 4.29401949 | Treponema sp. OMZ 838 | 1539298 | Bacteria | Bacteria | 366 | 7.68e-97 | NTclustered | gi|719625061|gb|CP009227.1| | 1539298 | g53628 | i0 | 94.872 | 10.2734082397004 | 234 | 12 | 88 | 0 | 1 | 234 | 1350908 | 1351141 | Treponema sp. OMZ 838, complete genome | blastn | 2743 | 366 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 838 | ||
| 23275193 | 23275193 | PRJNA1196438_P_NODE_28519_length_301_cov_3.539474_g28093_i0 | PRJNA1196438 | 28519 | 301 | 3.539474 | 10.65381674 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 132 | 3.5e-26 | NTclustered | gi|2621706436|emb|OY764216.1| | 2053615 | g28093 | i0 | 86.777 | 5.12292358803987 | 121 | 12 | 40 | 3 | 35 | 153 | 5054388 | 5054270 | MAG: Spirochaetia bacterium isolate 151cca69-ec02-4520-8068-0d6d6324a753 genome assembly, chromosome: 1 | blastn | 1542 | 132 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 23275216 | 23275216 | PRJNA1196438_P_NODE_31939_length_300_cov_3.563877_g31513_i0 | PRJNA1196438 | 31939 | 300 | 3.563877 | 10.691631 | Treponema socranskii | 53419 | Bacteria | Bacteria | 279 | 1.18e-70 | NTclustered | gi|1868715119|emb|LR796240.1| | 69713 | g31513 | i0 | 100 | 3.36333333333333 | 151 | 0 | 89 | 0 | 1 | 151 | 2575574 | 2575424 | Treponema socranskii subsp. buccale strain Marseille-CSURQ0203 genome assembly, chromosome: contig00001 | blastn | 1009 | 279 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema socranskii |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;