RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1196438" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1196438 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1597911 1597911 PRJNA1196438_P_NODE_55802_length_264_cov_2.764398_g55375_i0 PRJNA1196438 55802 264 2.764398 7.29801072 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 54.7 0.007   NTclustered gi|2874253741|emb|OY969584.1| 1672391 g55375 i0 94.286 0.462121212121212 35 2 13 0 160 194 2265328 2265362 MAG: uncultured Chloroflexia bacterium isolate MFD01299.bin.c.4 genome assembly, chromosome: 1 blastn 122 54.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
6701504 6701504 PRJNA1196438_P_NODE_79306_length_235_cov_3.376543_g78879_i0 PRJNA1196438 79306 235 3.376543 7.93487605 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 200 7.11e-47   NTclustered gi|2874253812|emb|OY969796.1| 1672391 g78879 i0 83.111 0.957446808510638 225 33 95 4 1 224 126824 126604 MAG: uncultured Chloroflexia bacterium isolate MFD01872.bin.1.103 genome assembly, chromosome: 1 blastn 225 200 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
18174837 18174837 PRJNA1196438_P_NODE_50615_length_272_cov_2.025126_g50188_i0 PRJNA1196438 50615 272 2.025126 5.50834272 Caldilineaceae bacterium 2614250 Bacteria Bacteria 60.2 1.49e-4   NTclustered gi|2893358382|emb|OZ220676.1| 2614250 g50188 i0 100 0.441176470588235 32 0 12 0 158 189 1354571 1354602 MAG: Caldilineaceae bacterium isolate 6911f4b3-f793-4dac-9473-b80504ec0e1d genome assembly, chromosome: 1 blastn 120 60.2 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
18175134 18175134 PRJNA1196438_P_NODE_7195_length_382_cov_1.495146_g6773_i0 PRJNA1196438 7195 382 1.495146 5.71145772 uncultured Dehalococcoidia bacterium 498747 Bacteria Bacteria 60.2 2.18e-4   NTclustered gi|2518550964|emb|OX638324.1| 498747 g6773 i0 94.872 2.38219895287958 39 1 10 1 222 260 1682414 1682451 MAG: uncultured Dehalococcoidia bacterium isolate 3cc91b85-964c-4eee-822c-8c355d828f5f genome assembly, chromosome: 1 blastn 910 60.2 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;