RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1196438" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA1196438 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5426029 5426029 PRJNA1196438_P_NODE_10725_length_325_cov_2.400794_g10299_i0 PRJNA1196438 10725 325 2.400794 7.8025805 Coccomyxa subellipsoidea 248742 Plants Plants 206 2.2199999999999994e-48   NTclustered gi|1360638125|gb|AC277041.1| 574566 g10299 i0 87.64 1.06769230769231 178 21 54 1 1 177 39530 39707 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 347 206 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
16345812 16345812 PRJNA1196438_P_NODE_35733_length_295_cov_4.247748_g35307_i0 PRJNA1196438 35733 295 4.247748 12.5308566 Chlamydomonas 3052 Plants Plants 89.8 2.09e-13   NTclustered gi|953272927|gb|KT625417.1| 35704 g35307 i0 96.296 2.08135593220339 54 2 18 0 37 90 10217 10164 Chlamydomonas applanata culture-collection SAG:11-9 chloroplast, partial genome blastn 614 89.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas applanata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;