RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1196438" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1196438 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14352570 14352570 PRJNA1196438_P_NODE_72772_length_245_cov_0.906977_g72345_i0 PRJNA1196438 72772 245 0.906977 2.22209365 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 89.8 1.69e-13   NTclustered gi|470483057|ref|XM_004343890.1| 1257118 g72345 i0 93.333 0.244897959183673 60 4 24 0 57 116 2207 2266 Acanthamoeba castellanii str. Neff leucine rich repeat domain containing protein (ACA1_052260), partial mRNA blastn 60 89.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20724265 20724265 PRJNA1196438_P_NODE_19517_length_312_cov_3.096234_g19091_i0 PRJNA1196438 19517 312 3.096234 9.66025008 Dictyostelium discoideum 44689 Evosea other_Eukaryota 460 4.09e-125   NTclustered gi|66820011|ref|XM_638568.1| 352472 g19091 i0 91.793 1.05448717948718 329 10 100 2 1 312 500 172 Dictyostelium discoideum AX4 ARID/BRIGHT DNA binding domain-containing protein (DDB_G0275333) mRNA, complete cds blastn 329 460 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;