RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1196384" and tax_phylum = "Porifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1196384 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2318542 2318542 PRJNA1196384_S_NODE_82_length_1045_cov_4.695437_g57_i0 PRJNA1196384 82 1045 4.695437 49.06731665 Mycale 86015 Porifera other_Eukaryota 171 2.81e-37   NTclustered gi|514227091|gb|KC961671.1| 458504 g57 i0 79.92 13.1789473684211 249 37 23 11 757 998 289 47 Mycale laxissima voucher UERJ4 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 13772 171 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Poecilosclerida Mycalidae Mycale Mycale laxissima
21999421 21999421 PRJNA1196384_S_NODE_198_length_764_cov_6.748281_g153_i0 PRJNA1196384 198 764 6.748281 51.55686684 Halisarca dujardinii 2583056 Porifera other_Eukaryota 128 1.24e-24   NTclustered gi|164420980|ref|NC_010212.1| 2583056 g153 i0 86.325 14.738219895288 117 16 15 0 12 128 606 722 Halisarca dujardini mitochondrion, complete genome blastn 11260 128 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Chondrillida Halisarcidae Halisarca Halisarca dujardinii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;