RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1196384" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1196384 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7976092 7976092 PRJNA1196384_S_NODE_7107_length_159_cov_2.844262_g7043_i0 PRJNA1196384 7107 159 2.844262 4.52237658 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 134 4.5700000000000005e-27   NTclustered gi|19911168|dbj|AB066367.1| 108607 g7043 i0 83.333 16.2578616352201 144 24 91 0 1 144 452 595 Mastigamoeba balamuthi ef-2 gene for elongation factor 2, partial cds, clone:MbEF2-58 blastn 2585 134 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
9250641 9250641 PRJNA1196384_S_NODE_5968_length_170_cov_1.233083_g5904_i0 PRJNA1196384 5968 170 1.233083 2.0962411 Dictyostelium purpureum 5786 Evosea other_Eukaryota 226 7.919999999999998e-55   NTclustered gi|330804020|ref|XM_003289950.1| 5786 g5904 i0 90.588 95.1705882352941 170 16 100 0 1 170 253 84 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_92405), mRNA blastn 16179 226 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
21999424 21999424 PRJNA1196384_S_NODE_2158_length_264_cov_3.845815_g2094_i0 PRJNA1196384 2158 264 3.845815 10.1529516 Protostelium mycophagum 472931 Evosea other_Eukaryota 106 1.83e-18   NTclustered gi|262262907|gb|FJ766450.1| 472931 g2094 i0 93.151 6.75 73 4 28 1 71 143 777 706 Protostelium mycophagum strain HI06-9a-2 small subunit ribosomal RNA gene, partial sequence blastn 1782 106 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
24548831 24548831 PRJNA1196384_S_NODE_6440_length_165_cov_1.390625_g6376_i0 PRJNA1196384 6440 165 1.390625 2.29453125 Filamoeba sp. JIH56 746887 Evosea other_Eukaryota 283 4.4899999999999995e-72   NTclustered gi|291419705|gb|GQ371176.1| 746887 g6376 i0 97.576 100.090909090909 165 4 100 0 1 165 429 593 Filamoeba sp. JIH56 18S ribosomal RNA gene, partial sequence blastn 16515 283 1 Eukaryota Amoebozoa   Evosea Variosea     Filamoeba Filamoeba sp. JIH56

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;