RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1196384" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1196384 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4149680 4149680 PRJNA1196384_S_NODE_7724_length_155_cov_1.288136_g7660_i0 PRJNA1196384 7724 155 1.288136 1.9966108 Lytechinus pictus 7653 Echinodermata other_Eukaryota 137 3.42e-28   NTclustered gi|2707368532|ref|XM_054914073.2| 7653 g7660 i0 83.117 16.2193548387097 154 22 98 4 3 154 738 587 PREDICTED: Lytechinus pictus heat shock 70 kDa protein IV (LOC129277891), mRNA blastn 2514 137 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
13796552 13796552 PRJNA1196384_S_NODE_8111_length_152_cov_2.034783_g8047_i0 PRJNA1196384 8111 152 2.034783 3.09287016 Opisthokonta 33154 Echinodermata other_Eukaryota 104 3.38e-18   NTclustered gi|1752370547|ref|XM_774944.5| 7668 g8047 i0 90.909 44.875 77 7 51 0 75 151 515 439 PREDICTED: Strongylocentrotus purpuratus 40S ribosomal protein S16 (LOC577040), mRNA blastn 6821 104 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;