RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1196384" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1196384 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5425912 5425912 PRJNA1196384_S_NODE_6445_length_165_cov_1.218750_g6381_i0 PRJNA1196384 6445 165 1.21875 2.0109375 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 104 3.76e-18   NTclustered gi|470483818|ref|XM_004343959.1| 1257118 g6381 i0 78.659 33.7393939393939 164 29 99 2 1 164 187 344 Acanthamoeba castellanii str. Neff Vtype ATPase, C subunit (ACA1_053290), partial mRNA blastn 5567 104 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11801246 11801246 PRJNA1196384_S_NODE_5570_length_174_cov_2.795620_g5506_i0 PRJNA1196384 5570 174 2.79562 4.8643788 Paravannella minima 1443144 Discosea other_Eukaryota 322 1.01e-83   NTclustered gi|571331049|gb|KF895376.1| 1443144 g5506 i0 100 93.5747126436782 174 0 100 0 1 174 490 317 Paravannella minima strain CCAP 1533/1 clone 1 actin gene, partial cds blastn 16282 322 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;