RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1196384" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1196384 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
322768 322768 PRJNA1196384_S_NODE_8161_length_152_cov_1.330435_g8097_i0 PRJNA1196384 8161 152 1.330435 2.0222612 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 104 3.38e-18   NTclustered gi|2386245158|ref|XM_001446884.2| 5888 g8097 i0 79.739 1.82236842105263 153 23 98 8 4 152 614 466 Paramecium tetraurelia uncharacterized protein (GSPATT00014470001), partial mRNA blastn 277 104 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
6700553 6700553 PRJNA1196384_S_NODE_2226_length_260_cov_2.354260_g2162_i0 PRJNA1196384 2226 260 2.35426 6.121076 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 189 1.7299999999999996e-43   NTclustered gi|1460089|emb|X99489.1| 5888 g2162 i0 80 31.7961538461538 260 48 99 4 1 258 700 957 Paramecium tetraurelia alphaPT1 gene for alpha-tubulin blastn 8267 189 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
18174284 18174284 PRJNA1196384_S_NODE_2815_length_231_cov_1.747423_g2751_i0 PRJNA1196384 2815 231 1.747423 4.03654713 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 156 1.53e-33   NTclustered gi|21215210|gb|AF510207.1| 94289 g2751 i0 88.372 50.4761904761905 129 15 56 0 103 231 1488 1360 Sterkiella histriomuscorum beta-tubulin gene, complete cds blastn 11660 156 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;