RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1196384" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1196384 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11801283 11801283 PRJNA1196384_S_NODE_7650_length_155_cov_3.694915_g7586_i0 PRJNA1196384 7650 155 3.694915 5.72711825 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 287 3.21e-73   NTclustered gi|88792583|gb|DQ386164.1| 372086 g7586 i0 100 101.187096774194 155 0 100 0 1 155 1379 1533 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 15684 287 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
18174380 18174380 PRJNA1196384_S_NODE_8255_length_151_cov_3.763158_g8191_i0 PRJNA1196384 8255 151 3.763158 5.68236858 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 263 5.23e-66   NTclustered gi|88792583|gb|DQ386164.1| 372086 g8191 i0 98.013 31.4370860927152 151 3 100 0 1 151 2069 2219 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 4747 263 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
18894634 18894634 PRJNA1196384_S_NODE_6975_length_160_cov_3.951220_g6911_i0 PRJNA1196384 6975 160 3.95122 6.321952 Cercomonadidae 45108 SAR_Eukaryotes SAR_Eukaryotes 296 5.55e-76   NTclustered gi|88792583|gb|DQ386164.1| 372086 g6911 i0 100 100.8 160 0 100 0 1 160 908 749 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 16128 296 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
20724021 20724021 PRJNA1196384_S_NODE_2417_length_249_cov_4.273585_g2353_i0 PRJNA1196384 2417 249 4.273585 10.64122665 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 302 2.03e-77   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g2353 i0 89.712 86.0240963855422 243 16 98 5 7 249 3907 3674 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 21420 302 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
20724028 20724028 PRJNA1196384_S_NODE_2917_length_227_cov_5.215789_g2853_i0 PRJNA1196384 2917 227 5.215789 11.83984103 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 414 2.2399999999999998e-111   NTclustered gi|88792583|gb|DQ386164.1| 372086 g2853 i0 99.559 97.7488986784141 227 1 100 0 1 227 1761 1535 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 22189 414 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;