RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1196384" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1196384 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9250672 9250672 PRJNA1196384_S_NODE_7988_length_153_cov_1.405172_g7924_i0 PRJNA1196384 7988 153 1.405172 2.14991316 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 154 3.34e-33   NTclustered gi|657012367|gb|KF302531.1| 2850 g7924 i0 88.8 91.1241830065359 125 14 82 0 1 125 134 10 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 13942 154 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
16899795 16899795 PRJNA1196384_S_NODE_3934_length_200_cov_1.184049_g3870_i0 PRJNA1196384 3934 200 1.184049 2.368098 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 248 2.06e-61   NTclustered gi|657012367|gb|KF302531.1| 2850 g3870 i0 89.055 20.64 201 20 100 2 1 200 167 366 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 4128 248 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;