RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1196384" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA1196384 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5425854 5425854 PRJNA1196384_S_NODE_3325_length_214_cov_4.960452_g3261_i0 PRJNA1196384 3325 214 4.960452 10.61536728 Deinococcus geothermalis 68909 Bacteria Bacteria 396 7.559999999999996e-106   NTclustered gi|94554390|gb|CP000359.1| 319795 g3261 i0 100 197.981308411215 214 0 100 0 1 214 326554 326767 Deinococcus geothermalis DSM 11300, complete genome blastn 42368 396 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
6146001 6146001 PRJNA1196384_S_NODE_3825_length_202_cov_2.933333_g3761_i0 PRJNA1196384 3825 202 2.933333 5.92533266 Deinococcus 1298 Bacteria Bacteria 374 3.3e-99   NTclustered gi|470478007|ref|NR_076423.1| 68909 g3761 i0 100 191.39603960396 202 0 100 0 1 202 1287 1488 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 38662 374 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
7976020 7976020 PRJNA1196384_S_NODE_3087_length_221_cov_3.304348_g3023_i0 PRJNA1196384 3087 221 3.304348 7.30260908 Deinococcus geothermalis 68909 Bacteria Bacteria 398 2.1799999999999995e-106   NTclustered gi|94554390|gb|CP000359.1| 319795 g3023 i0 99.099 362.886877828054 222 0 100 2 1 221 326193 325973 Deinococcus geothermalis DSM 11300, complete genome blastn 80198 398 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
9971258 9971258 PRJNA1196384_S_NODE_1788_length_293_cov_2.515625_g1724_i0 PRJNA1196384 1788 293 2.515625 7.37078125 Deinococcus 1298 Bacteria Bacteria 536 6.149999999999998e-148   NTclustered gi|3093386|emb|AJ000002.1| 68909 g1724 i0 99.659 107.006825938567 293 1 100 0 1 293 10 302 Deinococcus geothermalis 16S rRNA gene, strain E50053 blastn 31353 536 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
18174294 18174294 PRJNA1196384_S_NODE_3455_length_211_cov_4.160920_g3391_i0 PRJNA1196384 3455 211 4.16092 8.7795412 Deinococcus geothermalis 68909 Bacteria Bacteria 370 4.5e-98   NTclustered gi|94554390|gb|CP000359.1| 319795 g3391 i0 100 308.374407582938 200 0 95 0 1 200 328540 328739 Deinococcus geothermalis DSM 11300, complete genome blastn 65067 370 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
21445112 21445112 PRJNA1196384_S_NODE_977_length_387_cov_2.900000_g913_i0 PRJNA1196384 977 387 2.9 11.223 Deinococcus 1298 Bacteria Bacteria 704 0   NTclustered gi|470478007|ref|NR_076423.1| 68909 g913 i0 99.483 187.997416020672 387 2 100 0 1 387 709 323 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 72755 710 0.991549295774648 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;