RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1196384" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA1196384 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7976010 7976010 PRJNA1196384_S_NODE_2367_length_252_cov_0.902326_g2303_i0 PRJNA1196384 2367 252 0.902326 2.27386152 Auxenochlorella protothecoides 3075 Plants Plants 193 1.29e-44   NTclustered gi|760443472|ref|XM_011400503.1| 3075 g2303 i0 81.048 35.0912698412698 248 41 97 6 8 252 4280 4036 Auxenochlorella protothecoides Pyrophosphate-energized vacuolar membrane proton pump 1 partial mRNA blastn 8843 193 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
15625459 15625459 PRJNA1196384_S_NODE_3173_length_218_cov_2.900552_g3109_i0 PRJNA1196384 3173 218 2.900552 6.32320336 Chlamydomonas reinhardtii 3055 Plants Plants 117 6.740000000000001e-22   NTclustered gi|2082256028|ref|XM_001702556.2| 3055 g3109 i0 80.124 1.87614678899083 161 28 72 3 56 213 412 253 Chlamydomonas reinhardtii ribosomal protein L30 (CHLRE_10g420750v5), mRNA blastn 409 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15625517 15625517 PRJNA1196384_S_NODE_6593_length_164_cov_0.897638_g6529_i0 PRJNA1196384 6593 164 0.897638 1.47212632 Chlamydomonas reinhardtii 3055 Plants Plants 185 1.2899999999999997e-42   NTclustered gi|2082243702|ref|XM_043061450.1| 3055 g6529 i0 89.189 81.280487804878 148 16 90 0 16 163 1160 1307 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g204250v5), mRNA blastn 13330 185 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18174332 18174332 PRJNA1196384_S_NODE_5735_length_172_cov_4.555556_g5671_i0 PRJNA1196384 5735 172 4.555556 7.83555632 Chlamydomonas reinhardtii 3055 Plants Plants 100 5.08e-17   NTclustered gi|2082239523|ref|XM_001699755.2| 3055 g5671 i0 98.246 24.6976744186047 57 1 33 0 9 65 221 277 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g101350v5), mRNA blastn 4248 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24548768 24548768 PRJNA1196384_S_NODE_2320_length_254_cov_3.244240_g2256_i0 PRJNA1196384 2320 254 3.24424 8.2403696 Auxenochlorella protothecoides 3075 Plants Plants 135 2.2300000000000003e-27   NTclustered gi|760444762|ref|XM_011401148.1| 3075 g2256 i0 77.119 3.41338582677165 236 52 93 2 5 239 256 22 Auxenochlorella protothecoides 40S ribosomal protein S16 partial mRNA blastn 867 135 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;