RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1195551" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA1195551 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2873355 2873355 PRJNA1195551_S_NODE_18583_length_231_cov_1.945055_g18230_i0 PRJNA1195551 18583 231 1.945055 4.49307705 Fusobacterium polymorphum 76857 Bacteria Bacteria 187 5.4199999999999984e-43   NTclustered gi|2645859777|gb|CP141277.1| 76857 g18230 i0 83.254 91.2813852813853 209 29 89 6 23 228 327241 327446 Fusobacterium polymorphum strain C48P chromosome, complete genome blastn 21086 187 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
15625333 15625333 PRJNA1195551_S_NODE_19733_length_225_cov_2.363636_g19380_i0 PRJNA1195551 19733 225 2.363636 5.318181 Cetobacterium somerae 188913 Bacteria Bacteria 311 2.99e-80   NTclustered gi|2201062197|gb|CP092519.1| 188913 g19380 i0 91.556 5 225 19 100 0 1 225 1159381 1159157 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 1125 311 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
17620859 17620859 PRJNA1195551_S_NODE_22314_length_213_cov_1.902439_g21961_i0 PRJNA1195551 22314 213 1.902439 4.05219507 Cetobacterium 180162 Bacteria Bacteria 394 2.7e-105   NTclustered gi|2865368125|gb|CP122294.1| 188913 g21961 i0 100 520.24882629108 213 0 100 0 1 213 279268 279480 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 110813 394 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
17620875 17620875 PRJNA1195551_S_NODE_33814_length_175_cov_1.650794_g33461_i0 PRJNA1195551 33814 175 1.650794 2.8888895 Cetobacterium 180162 Bacteria Bacteria 224 2.9499999999999995e-54   NTclustered gi|2666488225|gb|CP143319.1| 188913 g33461 i0 89.714 52.2342857142857 175 18 100 0 1 175 93282 93456 Cetobacterium somerae strain ceto chromosome, complete genome blastn 9141 224 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
18174158 18174158 PRJNA1195551_S_NODE_12995_length_267_cov_7.431193_g12642_i0 PRJNA1195551 12995 267 7.431193 19.84128531 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 455 1.5900000000000002e-123   NTclustered gi|922689899|gb|CP012410.1| 712357 g12642 i0 97.378 24.9475655430712 267 7 100 0 1 267 51828 52094 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 6661 455 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
22719889 22719889 PRJNA1195551_S_NODE_17798_length_235_cov_2.516129_g17445_i0 PRJNA1195551 17798 235 2.516129 5.91290315 Streptobacillus 34104 Bacteria Bacteria 351 1.85e-92   NTclustered gi|470485174|ref|NR_076688.1| 34105 g17445 i0 93.644 23.2808510638298 236 13 100 2 1 235 256 490 Streptobacillus moniliformis strain DSM 12112 23S ribosomal RNA gene, complete sequence blastn 5471 351 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;